Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00513 ATGTTTTTTCTACCTGCAGGTAGAAGATGGGGTTTTCCTAGATTTGCTGGTGACTGTGCCAGTGGTATGAAGAAGTATCCTCCAGGAACAATTTTAGAGCACAAGAGTGATATCACTGATTCTTGCTCTCAGATGATACTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTCAGGATTAAAATTATTTCTGGATCACCTTGCGGATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTACAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACCTTCTGAGCAAGGTGATATACCTGAAAAACAGTCTGAAAACAAGATGGATTCTGTAGTAGATTCTATCAAAGGACCGAATGTTACTCCGACTAGCAGCCCCGAGCTAGGGACGCCATTCACCGCTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCAGATCCTGGAACTTCACCGTTCTGTATTCCAGAGATGAATGGTGAGACGAAGAGAGAAGAAACCATTAAGGAAAGTCATGAACTCTGTGATACATCAGACACAGAAAGTGAAAGTCTGTCGACATCTTCGACTAGCTTTAGATACCAACCGTGGATCACAAAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCTGAGGCGTATCATGGTATGCCTCAGGCAACTACAACCAAGGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCTGGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCGATAGCATTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCGATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCTACCGGGGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATGTCGAGTTTTGCTCTAAAGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTTCTGGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGAGATCCATTAGAATGGTCTGCGAGGCAGAAAATTGCTGTTGGAGCTGCTCGCGGGTTAAGGTATTTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCGACATGAGGCCGAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGCCGATATTTATTCCTTTGGGGTGGTATTGGTGGAGCTTGTTACCGGTAGAAAAGCTGTCGATCTCACTCGGCCAAAGGGACAACAGTGCCTAACTGAGTGGGCCCGGCCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGACCTGGACGTCTCTATTTAGAACATGAAGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGAGACATGGTGATGGACACAAATTACATTTCAACTCCGGGCTATGATGTCAGAAATAGAAGTGGTCGCATTTGGTCAGAGCCACTGCAGAGACATCATCATTACAGCGGTCCCCTCTTAGAAGATTCATTAGAGTCATCATTCAGTGGAAAGCTATCTCGTGACAAGTACAAACCTTTCTATTGGGATAGGAGTAGGGACAAGCCTTAA 2070 0.4411 MFFLPAGRRWGFPRFAGDCASGMKKYPPGTILEHKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCGSVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSPSEQGDIPEKQSENKMDSVVDSIKGPNVTPTSSPELGTPFTATTEAGTSSASSSDPGTSPFCIPEMNGETKREETIKESHELCDTSDTESESLSTSSTSFRYQPWITKLLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGAGMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSKVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYFHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADIYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRPGRLYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVRNRSGRIWSEPLQRHHHYSGPLLEDSLESSFSGKLSRDKYKPFYWDRSRDKP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00513 689 ProSitePatterns Tyrosine protein kinases specific active-site signature. 470 482 IPR008266 GO:0004672|GO:0006468
Vifa3g00513 689 SUPERFAMILY Protein kinase-like (PK-like) 333 633 IPR011009 -
Vifa3g00513 689 MobiDBLite consensus disorder prediction 159 195 - -
Vifa3g00513 689 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 424 - -
Vifa3g00513 689 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00513 689 Pfam Protein tyrosine and serine/threonine kinase 353 617 IPR001245 GO:0004672|GO:0006468
Vifa3g00513 689 PANTHER OS01G0750732 PROTEIN 258 627 - -
Vifa3g00513 689 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 425 628 - -
Vifa3g00513 689 Gene3D Transferase(Phosphotransferase) domain 1 425 631 - -
Vifa3g00513 689 MobiDBLite consensus disorder prediction 127 200 - -
Vifa3g00513 689 CDD STKc_IRAK 355 621 - -
Vifa3g00513 689 Gene3D Phosphorylase Kinase; domain 1 321 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00513 Vifa-Chr3 87228652 87231904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00513 288 615 Trihelix Transcription Factor Family AT1G68690 48.494 1.20e-98 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa3g00513 PK_Tyr_Ser-Thr 1.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00513 - - cam:101503019 1203.73