Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00512 ATGCCTTCCTTTTCCAATCCCATTGGTGAAATTTCATGGATTTGTCTCAACAATTTTGATTTCACTTCTTTATGCTTTCAAAGGACTTTACTAGACACATTCAACTTACTCTTTCTTTCTGTCTACTACATATCTTTACTTATCACTTTCATCACAAAAACCTCATCAAACCAAAGCCATAGAAAATCCTGGATTTTCCTGATTACCTCAATCTGTTGTGGTATTGTTAGCATTTCATTTTTCGCTATTGGATTCTGGAATATCATATCAGAATCTGAGCAAAAACTGAAATGGTTAACATGTATTATCAGAGGAGTCATTTGGATTTCTTTTTCTGTTTCTTTGATTGTTCAGAGAGTCAAATGGATAACAATGTTCAACTCTATATGGTGGTTATCTTCTTGTGTGTTTGTTTCATCGCTCAATATCGAAATTCTATTCCAAAATCGTGGAATTGAAATTTTTGATATTGTACCGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCATTCAAGATCTTGGATATTTTGGAACTCCTAGTGTCCAAGAAGGTTTATCTGAGCCACTGTTAGATAAAAAATTTGAAGCTAAACAAACAGCACTTGGTCATGCTACTTTTCTCAGCAAGTTGGTTTTCTCTTGGATGAATTCTTTATTCAGTTTAGGTTACTCAAAGCCACTAGATCTTGAAGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCCTATCAAAAATTTGTCCATGCCTGGGAATCACTTGTTAGAGAGAGACCAAAGAATAATAGAAAGAATTTGGTTCTTTGGTCTATTGTTAGAACTTACTTAAGAGAAAACATATTAATAGCATTTTACGGATTTATCACAACTGTTTCTGTTGCAGTTTCACCTCTAATACTCTATGCTTTTGTTAAATACTCAAATAGAGCTGAGGGAGATCTTAGACAAGGTCTTTCCATTGTTGGTTTTTTGATTGTCACCAAAGTGTTTGAGACTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGATCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAGCTCGGCAAGGACACGCCACTCGGCTGGAGAAATTGTGAATTACATTGCTGTTGATTCATATAGAATGGGAGAATTTCCATGGTGGTTCCATATAACATGGACTTCTCTATTGCAACTTGTTCTTTCCATTGGCATACTTTATGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTGGTCCCCCTTCTTATATGTGGGTTTCTTAATGTGCCATTTGCAAAAATCCTACAAATTTGCCAATCACAGTTTATGATTGCACAGGACGAGCGTCTTCGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTTAAGAACTTAGTCCAGTCACTACGCGGTAAAGAGTTCGTATGGTTGTCTAAGACACAGATCTTGAAAGCTTCTGGTACATTTATTTATTGGATGTCTCCTACTGTTATTTCTGCTGTTGTTTTTATTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACTATTTTCACTATTCTTGCTACATTGAGGAACTTGGGAGAGCCTGTTAGAATGGTCCCTGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTTAATAACTTTTTGCTCGATGAAGAACTAAAAAATGATCACAGTGTGAGAAAATTCAAGGAATGTTCGGTTAATGTTGTGGAAATACAAGATGGCAACTTCATTTGGGATCATGAATCCGTGTCTCCAACTTTAGCAGATGTGAACTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCGATACTTGGAGAGGTTCCTAAGATATCAGGAACTGTCAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAGAGTGGAACCGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATACGAGAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACTTGAGCGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCCGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGACTGTGTCATGACTGCTTTAAGAGAGAAAACTGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAGTCTCCTAACAGCAGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGGATCAAGATAGTGAACATAAAAAAGGTTCTGAAATCGAAGTCTTGTCTAATCCTCAAATCTCTCACGGTTTTTATCTCACTAAGAATGAAAGTGAGGGGGAGATTTCTAGTATCAGAGGTCCAACTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGATGGATGGAAGTCATTCTGGGATTATATTAATTATTCCAAAGGGACACTCCTGTTGTGTTTCATCCTGTTAGCACAATCTGGTTTCATTGCTCTTCAAACTGCATCAACCTTTTGGCTTTCTATAGCCATCGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGATTTTATACATTAGTTTCTTTTTCTAGTACTGGTTTTGCATATGTAAGGTCGTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCATTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGACTATATTGGACTTTGATATACCGTATTCCATCACCTTTGTATTATGTGTAGCACTCGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGATTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTGATGAATTTTGCTGCTGAGACATCACTTGGAGTTGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTGACACTTGTAGACACAGATGCTTCGTTGTTTTTTCATTCCAATGCGGCTATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGCTTATTCTACTTCCTCATGGATATGTATCCCCAGGCCTTGTGGGGCTGTCTCTTTCTTATGCTTTTACCTTGACAACAACCCAAATATTTTGGAGTAGATGGTTTTCCAACCTATCAAACTATATTGTATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCCATTGTGGATAATAACCGGCCGCCATCTTCGTGGCCTTCCAAGGGAAGGATTGATCTTCAAGGTTTGGAGATCAGATATCGTCCTAATGCTTCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGATGAACATTTGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTCTACTCGGATGATGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGGAAGCTACCAAGTCTCCTGGACTCTTCCGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAAAATTCTTGTTCTAGATGAAGCCACTGCCTCCATTGATTCTGCTACAGATGCCATTTTACAAAGAGTGATCAGACAAGAATTTAAAGCATGCACAGTTATAACCGTGGCTCACAGAGTTCCAACAGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATATGACGAGCCTTCAAAGCTACTGGAAACCAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGTTTCAGGAAGAATTCACCCCCAGAGATATTAGCAGACAGCAACGATGAGTGA 4416 0.3809 MPSFSNPIGEISWICLNNFDFTSLCFQRTLLDTFNLLFLSVYYISLLITFITKTSSNQSHRKSWIFLITSICCGIVSISFFAIGFWNIISESEQKLKWLTCIIRGVIWISFSVSLIVQRVKWITMFNSIWWLSSCVFVSSLNIEILFQNRGIEIFDIVPWLVHFLLLYCAIQDLGYFGTPSVQEGLSEPLLDKKFEAKQTALGHATFLSKLVFSWMNSLFSLGYSKPLDLEEIPSLVSEDEANMAYQKFVHAWESLVRERPKNNRKNLVLWSIVRTYLRENILIAFYGFITTVSVAVSPLILYAFVKYSNRAEGDLRQGLSIVGFLIVTKVFETLSQRHWFFNSRRSGLKMRSALMVAVYQKQLKLSSSARTRHSAGEIVNYIAVDSYRMGEFPWWFHITWTSLLQLVLSIGILYGVVGIGALPGLVPLLICGFLNVPFAKILQICQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRGKEFVWLSKTQILKASGTFIYWMSPTVISAVVFIGCAVTKSAPLNAETIFTILATLRNLGEPVRMVPEALSIMIQVKVSFDRLNNFLLDEELKNDHSVRKFKECSVNVVEIQDGNFIWDHESVSPTLADVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEVPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYESLLTAGTAFELLVSAHKDTITELDQDSEHKKGSEIEVLSNPQISHGFYLTKNESEGEISSIRGPTGAQLTQEEEKVIGNDGWKSFWDYINYSKGTLLLCFILLAQSGFIALQTASTFWLSIAIEIPKVTNATLIGFYTLVSFSSTGFAYVRSYLTALLGLKASTAFFSSFTTAIFNAPMHFFDSTPVGRILTRASSDLTILDFDIPYSITFVLCVALEILVIICIMVSVTWQVLIVAVPAMIASIYIQQYYQATARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLTLVDTDASLFFHSNAAMEWVVLRIEALQNLTVITASLLLILLPHGYVSPGLVGLSLSYAFTLTTTQIFWSRWFSNLSNYIVSVERIKQFIHIPVEPPAIVDNNRPPSSWPSKGRIDLQGLEIRYRPNASLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAIEKCQLKETIRKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRVIRQEFKACTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLLETNSSFSKLVAEYWSSFRKNSPPEILADSNDE 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00512 1471 Pfam ABC transporter transmembrane region 901 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00512 1471 Pfam ABC transporter transmembrane region 285 542 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00512 1471 SUPERFAMILY ABC transporter transmembrane region 270 577 IPR036640 GO:0005524|GO:0016020
Vifa3g00512 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Vifa3g00512 1471 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Vifa3g00512 1471 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Vifa3g00512 1471 FunFam ABC transporter C family member 5 868 1198 - -
Vifa3g00512 1471 Gene3D ABC transporter type 1, transmembrane domain 257 580 IPR036640 GO:0005524|GO:0016020
Vifa3g00512 1471 Gene3D ABC transporter type 1, transmembrane domain 867 1197 IPR036640 GO:0005524|GO:0016020
Vifa3g00512 1471 SUPERFAMILY ABC transporter transmembrane region 888 1199 IPR036640 GO:0005524|GO:0016020
Vifa3g00512 1471 Gene3D - 604 845 IPR027417 -
Vifa3g00512 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00512 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Vifa3g00512 1471 SMART AAA_5 624 797 IPR003593 GO:0016887
Vifa3g00512 1471 SMART AAA_5 1243 1428 IPR003593 GO:0016887
Vifa3g00512 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 905 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00512 1471 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Vifa3g00512 1471 CDD ABCC_MRP_domain2 1215 1435 - -
Vifa3g00512 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 818 IPR027417 -
Vifa3g00512 1471 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Vifa3g00512 1471 CDD ABCC_MRP_domain1 597 797 - -
Vifa3g00512 1471 FunFam Multidrug resistance protein associated1 576 840 - -
Vifa3g00512 1471 FunFam ABC transporter C family member 3 1200 1451 - -
Vifa3g00512 1471 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 204 1453 - -
Vifa3g00512 1471 Gene3D - 1200 1451 IPR027417 -
Vifa3g00512 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1450 IPR027417 -
Vifa3g00512 1471 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Vifa3g00512 1471 FunFam ABC transporter C family member 10 265 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00512 Vifa-Chr3 86573564 86579518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00512 595 862 Calmodulin-binding Proteins AT2G36910 25.347 5.64e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00512 - - gmx:100784827 2240.69