Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00505 ATGGGAAATTGCTGTACGATTCCAAATCTCAAGAACCTGAAACAAAAACCCAAGAAAGATGACAAGACCAAGACCAAAACTAAGACGAAGAAAAACACCAATAACACCAAACTGGAGGTCTTGAAAGAGCCCACGGGCCGAGAGATTGGGCTAAGCTACGAGTTAGGGAGGGAACTAGGGAGAGGAGAATTCGGCATAACGTATCTATGCAAAGATAGGAAAACGGGTCAAGAATTGGCCTGCAAATCCATTTCTAAGAATAAGCTTAGAACTGCGATTGATATTGAAGATGTCAGGAGAGAAGTTGAAATCATGAGGCATTTGCCTAAGCATCCTAACATCGTTACGTTGAAGGATACGTATGAAGATGACGACGACGTTCATCTTGTTATGGAACTTTGCGAAGGTGGTGAGCTTTTCGATCGCATCGTTGCTAGAGGTCATTACACCGAACGGGCCGCTGCTTCCGTCGTTAGAACCGCCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTTAAGCCCGAGAACTTTTTATTTGCGGACAAGAAGGAAACATCGCCTTTGAAAGCTATTGACTTTGGTTTGTCTATTTTCTTTAAACCAGGTGATAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAAGTATTAAAAAGAAATTATGGCCCCGAAATTGATATCTGGAGTGCTGGAGTGATTCTTTACATCTTGCTTTGTGGTGTTCCTCCTTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTATACGGTCGGTTCTTGACTTTAAAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATCCTAAGCGCCGACTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCAAAAACAGCTCCTGATGTTTCATTAGGAGAAACCGTTAGAGCAAGGCTGATGCAATTTTCTGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATGTGATGGACACAGAAAATAATGGCAAAATTAACATTGACGAACTTCGAGTAGGGTTGATTAAGCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTAAGTAATGCTTTAGGTGACGAGATTGACAAAAACAGTGAAGAAGTCATTAATGCAATTATGCAAGATGTGGACACAGACAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTAACAGTCTTAGTCTAAAACTGATGAAGGAGGGGTCAGTAAAAATTGAGCAATGA 1581 0.4124 MGNCCTIPNLKNLKQKPKKDDKTKTKTKTKKNTNNTKLEVLKEPTGREIGLSYELGRELGRGEFGITYLCKDRKTGQELACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDDDVHLVMELCEGGELFDRIVARGHYTERAAASVVRTAVQVVQMCHKHGVMHRDLKPENFLFADKKETSPLKAIDFGLSIFFKPGDRFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDFKRDPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKTAPDVSLGETVRARLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFHVMDTENNGKINIDELRVGLIKLGHQIPDADVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLHRAFQFFDKNESGYIELEELSNALGDEIDKNSEEVINAIMQDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMKEGSVKIEQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00505 526 SUPERFAMILY Protein kinase-like (PK-like) 52 322 IPR011009 -
Vifa3g00505 526 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Vifa3g00505 526 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Vifa3g00505 526 FunFam calcium-dependent protein kinase 13 139 319 - -
Vifa3g00505 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vifa3g00505 526 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vifa3g00505 526 SMART efh_1 430 458 IPR002048 GO:0005509
Vifa3g00505 526 SMART efh_1 358 386 IPR002048 GO:0005509
Vifa3g00505 526 SMART efh_1 394 422 IPR002048 GO:0005509
Vifa3g00505 526 SMART efh_1 466 494 IPR002048 GO:0005509
Vifa3g00505 526 SMART serkin_6 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00505 526 Gene3D Transferase(Phosphotransferase) domain 1 139 319 - -
Vifa3g00505 526 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vifa3g00505 526 Pfam Protein kinase domain 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00505 526 CDD STKc_CAMK 53 310 - -
Vifa3g00505 526 ProSiteProfiles Protein kinase domain profile. 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00505 526 MobiDBLite consensus disorder prediction 15 34 - -
Vifa3g00505 526 Pfam EF-hand domain pair 385 417 IPR002048 GO:0005509
Vifa3g00505 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 487 - -
Vifa3g00505 526 FunFam Calcium-dependent protein kinase 1 55 138 - -
Vifa3g00505 526 Gene3D - 320 494 - -
Vifa3g00505 526 SUPERFAMILY EF-hand 335 504 IPR011992 -
Vifa3g00505 526 FunFam Calcium-dependent protein kinase 7 320 495 - -
Vifa3g00505 526 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Vifa3g00505 526 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vifa3g00505 526 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Vifa3g00505 526 CDD EFh 430 492 IPR002048 GO:0005509
Vifa3g00505 526 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Vifa3g00505 526 Pfam EF-hand domain pair 429 492 IPR002048 GO:0005509
Vifa3g00505 526 Gene3D Phosphorylase Kinase; domain 1 55 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00505 Vifa-Chr3 84910456 84912946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00505 1 525 EF-hand Containing Proteins AT5G19450 75.660 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00505 Pkinase 5.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00505 K13412 - gmx:100815320 855.514