Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00504 ATGAAAAATTGCTGGGCAAATCTATGGCTTATGATCAAGAAACAAAAACCGAGACTGGTGGTGCTACAAAGGCCCACGGAAGAAGGGATTGAGTCTAGATACGAGTTAGGGAAGAGACTAGATATAGGAGAAATCGGAACTACTTATTTGTGCAAAGACAGAAATACGGGAGAGAAAGTTGCGTGCAAGTCGATTTCCAAGAATGGACTTAAAACAGCGATTGATATTGAAATGGTCAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACATCGTTACGTTGAAGGATACGTTTGAAGACTACGATCACGTTCATCTTGTTATGGAACACTGTGAAGGTGGTGTGCTTTTTGATCGAATCGTTGCTAGAGGACATTTCACCGAACTCAGAGCTGCTTCCATCGTTAATACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACCTGAAAACATTTTGTTTGCAAATAACATGGAAACAGCGCCCTTAAAAGTTACTGACTTTGCTTTGTCAATATTCTTTAAACCAGGTGAAAGATTTCATGAGATAACTGGAAGTCCATATTACATGGCCCCTGAAGTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCTCCGTTTTGGGCAGAAACTGAGCAGGGAGTTTCTCAAGCAATTATACGGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTTCTGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTTTGCAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCGATGTGATGGACACAGAAAATAATGGGAAAATTAACATTGACGAACTTCGAGTAGGGTTGATTAAGCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTAAGTAAGGCTTTAGGTGACGAGATTGACAAAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTAACAGTCTTAGTCTAAAACTGATGAAGGAGGGGTTATCATTTGAGAAAATGCAAGGATGGGAAGATTGGACAAGTCTTCAAATTCTGTTGCTATAA 1566 0.3959 MKNCWANLWLMIKKQKPRLVVLQRPTEEGIESRYELGKRLDIGEIGTTYLCKDRNTGEKVACKSISKNGLKTAIDIEMVRREVAILSHLPKHPNIVTLKDTFEDYDHVHLVMEHCEGGVLFDRIVARGHFTELRAASIVNTIVQVVQMCHKHGVMHRNLKPENILFANNMETAPLKVTDFALSIFFKPGERFHEITGSPYYMAPEVLMKNYGPEVDIWSVGVILYILLCGVPPFWAETEQGVSQAIIRSVIDFKRDPWPKVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWFLNGKTASNVSLRETVNVRLMQYFAMNKLKKTALRVIADHLSVEEVAGIKEGFDVMDTENNGKINIDELRVGLIKLGHQIPDADVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLHRAFQFFDKNESGYIELEELSKALGDEIDKNSEEVINAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMKEGLSFEKMQGWEDWTSLQILLL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00504 521 ProSiteProfiles Protein kinase domain profile. 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00504 521 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Vifa3g00504 521 ProSiteProfiles EF-hand calcium-binding domain profile. 335 370 IPR002048 GO:0005509
Vifa3g00504 521 SMART efh_1 447 475 IPR002048 GO:0005509
Vifa3g00504 521 SMART efh_1 339 367 IPR002048 GO:0005509
Vifa3g00504 521 SMART efh_1 411 439 IPR002048 GO:0005509
Vifa3g00504 521 SMART efh_1 375 403 IPR002048 GO:0005509
Vifa3g00504 521 FunFam Aurora kinase A 27 118 - -
Vifa3g00504 521 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vifa3g00504 521 Gene3D - 301 476 - -
Vifa3g00504 521 SUPERFAMILY Protein kinase-like (PK-like) 32 304 IPR011009 -
Vifa3g00504 521 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Vifa3g00504 521 Pfam EF-hand domain pair 410 473 IPR002048 GO:0005509
Vifa3g00504 521 CDD EFh 411 473 IPR002048 GO:0005509
Vifa3g00504 521 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vifa3g00504 521 Pfam Protein kinase domain 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00504 521 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Vifa3g00504 521 SUPERFAMILY EF-hand 317 485 IPR011992 -
Vifa3g00504 521 FunFam calcium-dependent protein kinase 13 120 300 - -
Vifa3g00504 521 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Vifa3g00504 521 FunFam Calcium-dependent protein kinase 7 301 476 - -
Vifa3g00504 521 Pfam EF-hand domain pair 366 398 IPR002048 GO:0005509
Vifa3g00504 521 Pfam EF hand 341 361 IPR002048 GO:0005509
Vifa3g00504 521 CDD STKc_CAMK 33 291 - -
Vifa3g00504 521 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Vifa3g00504 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 468 - -
Vifa3g00504 521 Gene3D Transferase(Phosphotransferase) domain 1 116 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00504 Vifa-Chr3 84868781 84871674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00504 18 501 EF-hand Containing Proteins AT5G19450 72.371 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00504 Pkinase 9.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00504 K13412 - rcu:8260316 770.77