Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00503 ATGATGAAAAATTGCTGGGCAAATCTATGGCTTATGAACAAGAAACAAAAACCAAAGCAGAAACCCCAAAAACTGGTGGTGCTACAAAGGCCCACGGAAGAAGGGATTGAGTCTAGATACAAGTTAGATAGAGGAGATTTTGGACGTACATACTTTTGGAAAGACAGAAATTCAGGAGAGGAAGTTGCGTGCAAGTGGATTTCCAAGAATGGACTTAAAACAGCGATTGATATTGAAATGGTCAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACATCGTTACATTGAAGGACGTGTTTGAAGACGACGATCACGTTCATCTTGTTATGGAACACTGTGAAGGTGGTAATCTTTTTGATCGCATGGATGCTATAGGACATTTCACCGATGCTAACCTTTTGGATCGCATCAATGGTGGAGGACATTTCACCGAAAGCAGAGCTGCTTCTTTCATTAATACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTAATACTTGAAAACATTTTGTTTGCAAATAATATGGGAACAGCGCCCTTAAAAGTTACTGACTTTGCTTTGTCAATTTTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAATCTATATTACATGGCCCCTGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACGTCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTAAGCAGCGAGTTTCTCAAGCAATTATACGGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTTCTGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGTAACCGTCAATGTACGGCTCATGCAATATTTTGCAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATGTGATGGACACAGAAAATAATGGCAAAATTAACATTGACGAACTTCGAGTAGGGTTGATTAAGCTAGGCCAACAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATCTAGACAAAGATGGGTACCTAGATTATGGTGAGTTTGTAGCCATTTCTATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCCGACGAGATTGACAAAAACAGTGAAGAAGTCATTAGTGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATAAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTAACAGTAAAAATTGA 1536 0.3913 MMKNCWANLWLMNKKQKPKQKPQKLVVLQRPTEEGIESRYKLDRGDFGRTYFWKDRNSGEEVACKWISKNGLKTAIDIEMVRREVAILSHLPKHPNIVTLKDVFEDDDHVHLVMEHCEGGNLFDRMDAIGHFTDANLLDRINGGGHFTESRAASFINTIVQVVQMCHKHGVMHRNLILENILFANNMGTAPLKVTDFALSIFFKPGERFHEIVGNLYYMAPELLMKNYGPEVDIWSVGVILYVLLCGVPPFWAETKQRVSQAIIRSVIDFKRDPWPKVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWFLNGKTASNVSLRVTVNVRLMQYFAMNKLKKTALRVIADHLSVEEVAGIKEGFHVMDTENNGKINIDELRVGLIKLGQQIPDADVQILMEAGDLDKDGYLDYGEFVAISIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEVISAIMHDVDTDKDGKISYKEFAAMMKARTDWRKASRQYSRERFNSKN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00503 511 SUPERFAMILY Protein kinase-like (PK-like) 41 322 IPR011009 -
Vifa3g00503 511 Gene3D Transferase(Phosphotransferase) domain 1 135 328 - -
Vifa3g00503 511 FunFam Calcium-dependent protein kinase 7 318 493 - -
Vifa3g00503 511 Gene3D Phosphorylase Kinase; domain 1 39 125 - -
Vifa3g00503 511 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Vifa3g00503 511 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 485 - -
Vifa3g00503 511 Pfam EF-hand domain pair 427 490 IPR002048 GO:0005509
Vifa3g00503 511 ProSiteProfiles EF-hand calcium-binding domain profile. 352 387 IPR002048 GO:0005509
Vifa3g00503 511 Gene3D - 350 418 - -
Vifa3g00503 511 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Vifa3g00503 511 FunFam calcium-dependent protein kinase 13 137 317 - -
Vifa3g00503 511 Coils Coil 443 463 - -
Vifa3g00503 511 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Vifa3g00503 511 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Vifa3g00503 511 SMART efh_1 464 492 IPR002048 GO:0005509
Vifa3g00503 511 SMART efh_1 356 384 IPR002048 GO:0005509
Vifa3g00503 511 SMART efh_1 392 420 IPR002048 GO:0005509
Vifa3g00503 511 SMART efh_1 428 456 IPR002048 GO:0005509
Vifa3g00503 511 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00503 511 Pfam EF-hand domain pair 377 415 IPR002048 GO:0005509
Vifa3g00503 511 SUPERFAMILY EF-hand 334 501 IPR011992 -
Vifa3g00503 511 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Vifa3g00503 511 Gene3D - 329 489 - -
Vifa3g00503 511 CDD EFh 428 490 IPR002048 GO:0005509
Vifa3g00503 511 CDD STKc_CAMK 41 308 - -
Vifa3g00503 511 ProSiteProfiles Protein kinase domain profile. 36 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00503 511 FunFam Aurora kinase A 30 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00503 Vifa-Chr3 84861574 84864092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00503 2 509 EF-hand Containing Proteins AT5G19450 63.277 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00503 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00503 K13412 - rcu:8260316 692.96