Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00502 ATGAAAAATTGCTGGGCAAATCTATGGCTTATGAACAAGAAACAAAAACCAAAGCAAAAACCGAGACTGGTGGTGCTACAAAGGCCCACGGAAGAAGGGATTGAGTCTAGATACGAGTTAGGGAAGAGACTAGATATAGGAGAAATCGGAACTACTTATTTGTGCAAAGACAGAAATACGGGAGAGAAAGTTGCGTGCAAGTCGATTTCCAAGAATGAACTTATAAAAGCTATTGATATTGAAGGGGTCAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACATCATTATGTTGAAGGATACGTATGAAGACGACGGTTACGTTCATCTTGTTACGGAACACTGTGAAGGTGGTGTGCTTTTTGATCGAATCGTTGCTAGAGGACATTACAGAGAACGCTCCGCAGCTTCTATCGTTAAAACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACCTGAAAACATTTTGTTTGCAAATAACATGGAAACAGCGCCCTTAAAAGTTACTGACTTTGATTTGTCAATATTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAATCTATATTACATGGCCCATGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTGAGCAGGGAGTTTCTCAAGCAATTATACTGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAATGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTCTGCAATGAACAAACTTAAGACAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATGTGATGGACACAGAAAATAATGGCAAAATTAACATTGACAAACTTCGAGTGGGGTTGATTAAGCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTCTATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCCGACGAGATTGACAAAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATAAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGAGGTTTAACAGTAAAAATTGA 1497 0.3928 MKNCWANLWLMNKKQKPKQKPRLVVLQRPTEEGIESRYELGKRLDIGEIGTTYLCKDRNTGEKVACKSISKNELIKAIDIEGVRREVAILSHLPKHPNIIMLKDTYEDDGYVHLVTEHCEGGVLFDRIVARGHYRERSAASIVKTIVQVVQMCHKHGVMHRNLKPENILFANNMETAPLKVTDFDLSIFFKPGERFHEIVGNLYYMAHELLMKNYGPEVDIWSVGVILYILLCGVPPFWAETEQGVSQAIILSVIDFKRDPWPMVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWLQNGKTASNVSLRETVNVRLMQYSAMNKLKTTALRVIADHLSVEEVAGIKEGFHVMDTENNGKINIDKLRVGLIKLGHQIPDADVQILMEAGDVDKDGYLDYGEFVAISIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEVINAIMHDVDTDKDGKISYKEFAAMMKARTDWRKASRQYSRERFNSKN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00502 498 FunFam Calcium-dependent protein kinase 7 305 480 - -
Vifa3g00502 498 FunFam calcium-dependent protein kinase 13 124 304 - -
Vifa3g00502 498 Pfam EF-hand domain pair 371 402 IPR002048 GO:0005509
Vifa3g00502 498 SUPERFAMILY Protein kinase-like (PK-like) 36 311 IPR011009 -
Vifa3g00502 498 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Vifa3g00502 498 CDD STKc_CAMK 37 295 - -
Vifa3g00502 498 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00502 498 FunFam Aurora kinase A 31 122 - -
Vifa3g00502 498 Pfam EF-hand domain pair 414 477 IPR002048 GO:0005509
Vifa3g00502 498 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 472 - -
Vifa3g00502 498 ProSiteProfiles EF-hand calcium-binding domain profile. 339 374 IPR002048 GO:0005509
Vifa3g00502 498 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vifa3g00502 498 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Vifa3g00502 498 Gene3D Transferase(Phosphotransferase) domain 1 120 304 - -
Vifa3g00502 498 Pfam Protein kinase domain 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00502 498 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Vifa3g00502 498 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vifa3g00502 498 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Vifa3g00502 498 Gene3D - 305 481 - -
Vifa3g00502 498 SMART efh_1 451 479 IPR002048 GO:0005509
Vifa3g00502 498 SMART efh_1 379 407 IPR002048 GO:0005509
Vifa3g00502 498 SMART efh_1 415 443 IPR002048 GO:0005509
Vifa3g00502 498 SMART efh_1 343 371 IPR002048 GO:0005509
Vifa3g00502 498 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Vifa3g00502 498 Coils Coil 430 450 - -
Vifa3g00502 498 SUPERFAMILY EF-hand 320 488 IPR011992 -
Vifa3g00502 498 CDD EFh 415 477 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00502 Vifa-Chr3 84712450 84719827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00502 1 496 EF-hand Containing Proteins AT5G19450 66.860 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00502 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00502 K13412 - rcu:8260316 749.969