Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00501 ATGAAAAATTGCTGGGCAAATCTATGGCTTATGAACAAGAAACAAAAACCAAAGCAAAAACCGAGACTGGTGGTGCTACAAAGGCCCACAGAAGAAGGGATTGAGTCTAGATACGAGTTAGGGAAGAGACTAGATATAGGAGAAATCGGAACTACTTATTTGTGCAAAGACAGAAATACGGGAGAGAAAGTTGCGTGCAAGTCGATTTCCAAGAATGAACTTATAAAAGCTATTGATATTGAAGGGGTTAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACATCATTACGTTGAAGGATACGTATGAAGACGACGATTACGTTCATCTTGTTACAGAACACTGTGAAGGTGGTGTGCTTTTTGATCGAATCGTTGCTAGAGGACATTACAGAGAACGCTCCGCAGCTTCTATCATTAAAACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACCTGAAAACATTTTGTTTGCAAATAACATGGAAACAGCGCCCTTAAAAGTTACTGACTTTGATTTGTCAATATTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAATCTATATTACATGGCCCCTGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTGAGCAGGGAGTTTCTCAAGCAATTATACTGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAATGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTCTGCAATGAACAAACTTAAGACAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTCTATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCCGACGAGATTGACAAAAACAGTGAAGAAATCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATAAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGATGTTTAACAGTATAAATTGA 1434 0.3905 MKNCWANLWLMNKKQKPKQKPRLVVLQRPTEEGIESRYELGKRLDIGEIGTTYLCKDRNTGEKVACKSISKNELIKAIDIEGVRREVAILSHLPKHPNIITLKDTYEDDDYVHLVTEHCEGGVLFDRIVARGHYRERSAASIIKTIVQVVQMCHKHGVMHRNLKPENILFANNMETAPLKVTDFDLSIFFKPGERFHEIVGNLYYMAPELLMKNYGPEVDIWSVGVILYILLCGVPPFWAETEQGVSQAIILSVIDFKRDPWPMVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWLQNGKTASNVSLRETVNVRLMQYSAMNKLKTTALRVIADHLSVEEVAGIKEGFHLGHQIPDADVQILMEAGDVDKDGYLDYGEFVAISIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEIINAIMHDVDTDKDGKISYKEFAAMMKARTDWRKASRQYSREMFNSIN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00501 477 CDD EFh 394 456 IPR002048 GO:0005509
Vifa3g00501 477 FunFam Calmodulin 1 333 458 - -
Vifa3g00501 477 Pfam Protein kinase domain 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00501 477 Gene3D Phosphorylase Kinase; domain 1 12 119 - -
Vifa3g00501 477 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vifa3g00501 477 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00501 477 Pfam EF-hand domain pair 393 456 IPR002048 GO:0005509
Vifa3g00501 477 CDD STKc_CAMK 37 295 - -
Vifa3g00501 477 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Vifa3g00501 477 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vifa3g00501 477 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Vifa3g00501 477 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vifa3g00501 477 Gene3D - 305 460 - -
Vifa3g00501 477 Pfam EF-hand domain pair 350 381 IPR002048 GO:0005509
Vifa3g00501 477 FunFam Aurora kinase A 31 122 - -
Vifa3g00501 477 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Vifa3g00501 477 FunFam calcium-dependent protein kinase 13 124 304 - -
Vifa3g00501 477 SUPERFAMILY EF-hand 320 467 IPR011992 -
Vifa3g00501 477 SUPERFAMILY Protein kinase-like (PK-like) 36 311 IPR011009 -
Vifa3g00501 477 Gene3D Transferase(Phosphotransferase) domain 1 120 304 - -
Vifa3g00501 477 Coils Coil 409 429 - -
Vifa3g00501 477 SMART efh_1 394 422 IPR002048 GO:0005509
Vifa3g00501 477 SMART efh_1 358 386 IPR002048 GO:0005509
Vifa3g00501 477 SMART efh_1 430 458 IPR002048 GO:0005509
Vifa3g00501 477 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00501 Vifa-Chr3 84607877 84615270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00501 1 477 EF-hand Containing Proteins AT5G19450 64.286 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00501 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00501 K13412 - rcu:8260316 713.761