Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00500 ATGAAAAATTGCTGGGCAAATCTATGGCTTATGAACAAGAAACAAAAACCAAAGCAAAAACCGAGACTGGTGGTGCTACAAAGGCCCACGGAAGAAGGGATTGAGTCTAGATACGAGTTAGGGAAGAGACTAGATATAGGAGAAATCGGAACTACTTATTTGTGCAAAGACAGAAATACGGGAGAGAAAGTTGCGTGCAAGTCGATTTCCAAGAATGAACTTATAAAAGCTATTGATATTGAAGGGGTCAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACGTCATTACGTTGAAGGATGCGTATGAAGACGACGATCACGTTCTTCTTGTTATGGAACACTGTGAAGGTGGTAACCTTTTGGATCGCATCAATGGTAGAGGACATTTCACCGATGCTAACCTTTGGGATCGCATCAATGGTAGAGGACATTTCACCGAAAGCAGAGCTGCTTCTGTCATTAATACCATCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGAATCTCAAACTTGGAAACATTTTGTTTGCAAATAATATGGGAACAGCGCCCTTAAAAGTTACTGACTTTGCTTTGTCAATTTTCTTTAAACCAGGTGAAAGATTTCATGAGATAGTTGGTAAACTATATTACATGGCCCCTGAATTGTTAATGAAAAATTATGGTCCTGAAGTTGATATATGGAGTGTTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCCCCGTTTTGGGCAGAAACTAAGCAGGGAGTTTCTCAAGCAATTATACGGTCGGTTATTGACTTTAAAAGAGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATTCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTTCAGAATGGTAAGACAGCTTCTAATGTTTCTTTACGAGAAACCGTCAATGTACGGCTCATGCAATATTTTGCAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGAATTCCATGTGATGGACACAGAAAATAATGGCAAAATTAACATTGACGAACTTCGAGTAGGGTTGATTAAGCTAGGCCACCAAATTCCTGATGCAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACGAAGATGGGTACCTAGATTATGGGGAGTTTGTAGCCATTTTTATTCATCTGAGAAGGATATCCCATGATGAACACCTACACAGAGCATTCCAATTTTTCGACAAAAATGAATCTGGGTATATTGAACTTGAGGAGTTACGTAATGCTTTAGCTGACGAGATTGACAAAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTAGAACTGATTGGAGAAAAGCATCAAGGCAGTATTAG 1515 0.3954 MKNCWANLWLMNKKQKPKQKPRLVVLQRPTEEGIESRYELGKRLDIGEIGTTYLCKDRNTGEKVACKSISKNELIKAIDIEGVRREVAILSHLPKHPNVITLKDAYEDDDHVLLVMEHCEGGNLLDRINGRGHFTDANLWDRINGRGHFTESRAASVINTIVQVVQMCHKHGVMHRNLKLGNILFANNMGTAPLKVTDFALSIFFKPGERFHEIVGKLYYMAPELLMKNYGPEVDIWSVGVILYILLCGVPPFWAETKQGVSQAIIRSVIDFKRDPWPKVSDNAKDLVKKMLDPDSKRRLTAQEVLDHPWFQNGKTASNVSLRETVNVRLMQYFAMNKLKKTALRVIADHLSVEEVAGIKEEFHVMDTENNGKINIDELRVGLIKLGHQIPDADVQILMEAGDVDEDGYLDYGEFVAIFIHLRRISHDEHLHRAFQFFDKNESGYIELEELRNALADEIDKNSEEVINAIMHDVDTDKDGKISYEEFAAMMKARTDWRKASRQY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00500 504 SUPERFAMILY EF-hand 336 500 IPR011992 -
Vifa3g00500 504 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vifa3g00500 504 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vifa3g00500 504 Gene3D - 320 496 - -
Vifa3g00500 504 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vifa3g00500 504 Pfam EF-hand domain pair 386 417 IPR002048 GO:0005509
Vifa3g00500 504 SUPERFAMILY Protein kinase-like (PK-like) 26 324 IPR011009 -
Vifa3g00500 504 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Vifa3g00500 504 Coils Coil 445 465 - -
Vifa3g00500 504 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Vifa3g00500 504 FunFam calcium-dependent protein kinase 13 139 319 - -
Vifa3g00500 504 Gene3D Transferase(Phosphotransferase) domain 1 120 319 - -
Vifa3g00500 504 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Vifa3g00500 504 FunFam Aurora kinase A 31 122 - -
Vifa3g00500 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 487 - -
Vifa3g00500 504 CDD EFh 430 492 IPR002048 GO:0005509
Vifa3g00500 504 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Vifa3g00500 504 FunFam Calcium-dependent protein kinase 7 320 495 - -
Vifa3g00500 504 Pfam Protein kinase domain 38 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00500 504 CDD STKc_CAMK 37 310 - -
Vifa3g00500 504 SMART efh_1 358 386 IPR002048 GO:0005509
Vifa3g00500 504 SMART efh_1 430 458 IPR002048 GO:0005509
Vifa3g00500 504 SMART efh_1 394 422 IPR002048 GO:0005509
Vifa3g00500 504 SMART efh_1 466 494 IPR002048 GO:0005509
Vifa3g00500 504 Pfam EF-hand domain pair 429 492 IPR002048 GO:0005509
Vifa3g00500 504 ProSiteProfiles Protein kinase domain profile. 38 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00500 504 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00500 Vifa-Chr3 84535549 84538046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00500 1 504 EF-hand Containing Proteins AT5G19450 63.740 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00500 Pkinase 2.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00500 K13412 - gmx:100815320 712.99