Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00495 ATGAAAAATTGCCTTGGAAATCTATGCCGTATGAACAAGAAGCAAAAACCCCAAAAACTGGTGGTTATAAAAAGGCCCACGGAAAAGGGGATTGAGTCTAGATACGAGTTAGGGAAGAGACTAGATAGAGGAGATTTTGGACGTAGTACATACTTTTGCAAAGACAGAAATACGGGAGAGGAAGTTGCGTGCAAGTCGATTTCCAAGAATGAACTTAAAACAGCGCTTGATATTGAAGGGGTCAGAAGAGAGGTTGCTATCTTGAGTCATTTGCCTAAACACCCTAACATCGTTACGTTGAAGGATACGTTTGAAGACGACGATCACGTTCATCTTGTTATGGAACACTGTGAAGGTGGTAACCTTTTGAATCACATCAATGCTAGAGGAAATTTCACCGATGCTAATCTTTTGGATCGCATCAATGCTAGAGGACATTTCACCGAACTCAGAGCTGCTTCTGTCATTAATACCATCGTCCGAGTTGTTCAGATTTGCCACAAACATGGCGTGATGCATCGGAATCTCAAACCCGAAAACATTTTGTTTGCAATCAAGTATGAAACAGCGCCTTCAAAAGTTACTGACTTTAGTTCATCAATTTTCTTCAAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAAAGAAATTATGGCCCTGAAGTTGATATCTGGAATGCTGGAGCAATTCTCTACATCTTACTTTGTGGTGACGCTCCATTTTGGGCAGAAAGTAAGCAGGGATTTGCTCAAGCAATAATACAATCTGTTATTGACTTTGAAAGATATCCATGGCCAAAGGTTTCTGAAAAAGCAAAAGACCTTGTTATGAAGATGCTTGATCCTGATCCTAAGAGGCGGCTTACTGCACAGGAAGTTTTAGATCATCCATGGTTGCGCAAGCTTGTCAAGAAGATATCTAATGATACAAAATGCCTTGTTCAGAAGATGCTTGATCCTACCCTCGAGAGGTCAGACTATTGGTTGCGGCACAATCATTGGGAGAAACAATCATTGGGAGAAACAATCAGAGCAAAGCTTATTCAATTTTCTGTAGTGAACAAGCTTACAAAAACAACATCGACGATAATTGCAAAGCAATTGTCTATAGAAGTTGATGCAAAAAGTGACAGGGATTTTGTGATTGATACAGGAAATAGAGGCAAAATTAACTTGGATGAATTACGAATAAGGTTGCGTAAGCTAGACTACGAAATTCCTGATGGAAATGTGCAAAGACTTATGGTAGCTTTTGATGAAGACAAAGATGGTTACCTAGATTATGGAGAGTTTTTAGCCATTTGTATTCATCTAAGAAAAATATCCAATGAAAAACACATCAATAAAGCATTTGAATATCTTGATAAAAATCAATCTGGGTATATTGATCTTGAGGAGTTATGTAATGCTTTAGGTGACAAGGTTGACACAAACAGTGAGAAAGTCATTAATGAAATTATGCATGATATGGACACATATAAGGATGGAATAATAATAAGTTATGAAGAAGTATGGAGCTGA 1551 0.3804 MKNCLGNLCRMNKKQKPQKLVVIKRPTEKGIESRYELGKRLDRGDFGRSTYFCKDRNTGEEVACKSISKNELKTALDIEGVRREVAILSHLPKHPNIVTLKDTFEDDDHVHLVMEHCEGGNLLNHINARGNFTDANLLDRINARGHFTELRAASVINTIVRVVQICHKHGVMHRNLKPENILFAIKYETAPSKVTDFSSSIFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWNAGAILYILLCGDAPFWAESKQGFAQAIIQSVIDFERYPWPKVSEKAKDLVMKMLDPDPKRRLTAQEVLDHPWLRKLVKKISNDTKCLVQKMLDPTLERSDYWLRHNHWEKQSLGETIRAKLIQFSVVNKLTKTTSTIIAKQLSIEVDAKSDRDFVIDTGNRGKINLDELRIRLRKLDYEIPDGNVQRLMVAFDEDKDGYLDYGEFLAICIHLRKISNEKHINKAFEYLDKNQSGYIDLEELCNALGDKVDTNSEKVINEIMHDMDTYKDGIIISYEEVWS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00495 516 Gene3D Phosphorylase Kinase; domain 1 11 118 - -
Vifa3g00495 516 Gene3D Transferase(Phosphotransferase) domain 1 135 357 - -
Vifa3g00495 516 SUPERFAMILY EF-hand 366 513 IPR011992 -
Vifa3g00495 516 Gene3D - 364 513 - -
Vifa3g00495 516 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Vifa3g00495 516 FunFam Aurora kinase A 27 120 - -
Vifa3g00495 516 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Vifa3g00495 516 Gene3D - 358 446 - -
Vifa3g00495 516 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Vifa3g00495 516 FunFam calcium-dependent protein kinase 13 137 317 - -
Vifa3g00495 516 Pfam EF-hand domain pair 397 442 IPR002048 GO:0005509
Vifa3g00495 516 CDD STKc_CAMK 34 308 - -
Vifa3g00495 516 SMART efh_1 456 484 IPR002048 GO:0005509
Vifa3g00495 516 SMART efh_1 420 448 IPR002048 GO:0005509
Vifa3g00495 516 Pfam Protein kinase domain 35 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00495 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 505 - -
Vifa3g00495 516 CDD EFh 459 513 IPR002048 GO:0005509
Vifa3g00495 516 ProSiteProfiles EF-hand calcium-binding domain profile. 488 516 IPR002048 GO:0005509
Vifa3g00495 516 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Vifa3g00495 516 ProSiteProfiles Protein kinase domain profile. 35 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00495 516 Pfam EF-hand domain pair 455 513 IPR002048 GO:0005509
Vifa3g00495 516 SUPERFAMILY Protein kinase-like (PK-like) 33 348 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00495 Vifa-Chr3 83751667 83756687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00495 19 513 EF-hand Containing Proteins AT5G19450 57.344 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00495 Pkinase 4.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00495 K13412 - gmx:100778471 589.726