Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00491 ATGGGAACTCCTGAATTTCCAGATCTAGGAAAACACTGTGCTGTTTCCGATTGCAAGCTCATTGATTTCTTACCCTTCACATGCGATCGATGCAACCAGGTGTATTGTTTGGAACACCGAAGCTATATCAAACATGAGTGTACAAAAGCGGACAAGCAAGATGTCAGTGTAGTAATATGTCCACTTTGCGCCAAGGGAGTTCGCCTAATTCCTGATCAAGATCCAAACATAACATGGGAGAATCATGTTAACACCGATTGCGACCCATCAAATTATGAGAAAGCTACAAAGAAGAAAAAATGCCCTGCACCTGGATGCAAAGAGATTTTAGTATTCTCAAACACTATTAAGTGCAGGGATTGCACGGTAGACCATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCAGGGCCTAAAAAATCGGAATCAAGTTTCTCTTTTATGAGTCTTATGAATAGGAATAGAAAACCAGAGTCTAAAACCAATTCGAGTTCAACCTCCTCCTCCTCCTCATCTAAGTGGACAACGAGCTTTCTTAGTGCTGCTTCTAATATCCGAGCTTCAGCTGAGGCTGGAATCTCAAAGTTGAGTGGTGAAATTAATCAAGCTTGGGGGACTTCAAGTGATGTTGGGGGAAAGAGCAATAGCAGTGGTCAAGTGGAGCAATGCCCTCAATGTGGTGCCGAGTTTTCTTCGGTTACATCTTTGGTTGATCATGTACAGAAAGTTCATGAAAGAAGCGGTAACCGATCTGCGGCAAATGTTACAATTGATGCGTGTCCAAAGTGTAGTAAAGGATTCAGAGATCCCGTGTCCCTTGTGGAGCATGTTGAGAGAGATCATGGTGGCACTTCTAGTTCTAGAGCATAG 876 0.4292 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHECTKADKQDVSVVICPLCAKGVRLIPDQDPNITWENHVNTDCDPSNYEKATKKKKCPAPGCKEILVFSNTIKCRDCTVDHCLKHRFGPDHKCPGPKKSESSFSFMSLMNRNRKPESKTNSSSTSSSSSSKWTTSFLSAASNIRASAEAGISKLSGEINQAWGTSSDVGGKSNSSGQVEQCPQCGAEFSSVTSLVDHVQKVHERSGNRSAANVTIDACPKCSKGFRDPVSLVEHVERDHGGTSSSRA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00491 291 Gene3D Classic Zinc Finger 199 286 - -
Vifa3g00491 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
Vifa3g00491 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Vifa3g00491 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vifa3g00491 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vifa3g00491 291 Gene3D - 2 59 IPR035896 -
Vifa3g00491 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Vifa3g00491 291 SMART c2h2final6 260 283 IPR013087 -
Vifa3g00491 291 SMART c2h2final6 223 246 IPR013087 -
Vifa3g00491 291 MobiDBLite consensus disorder prediction 155 175 - -
Vifa3g00491 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 251 IPR013087 -
Vifa3g00491 291 ProSitePatterns Zinc finger C2H2 type domain signature. 225 246 IPR013087 -
Vifa3g00491 291 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Vifa3g00491 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vifa3g00491 291 SUPERFAMILY beta-beta-alpha zinc fingers 224 279 IPR036236 -
Vifa3g00491 291 Pfam C2H2-type zinc finger 224 246 - -
Vifa3g00491 291 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Vifa3g00491 291 Gene3D - 80 155 IPR035896 -
Vifa3g00491 291 SUPERFAMILY AN1-like Zinc finger 93 145 IPR035896 -
Vifa3g00491 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vifa3g00491 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vifa3g00491 291 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00491 Vifa-Chr3 82375753 82376907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00491 1 289 C2H2 Transcription Factor Family AT2G41835 64.828 2.19e-130 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g00491 zf-AN1 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00491 - - gmx:100786272 499.975