Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00490 ATGGCTTCCTTTTGCAACTCCATTGGTGAAATTTCATGGCTTTGTCTCAAGAATTTTGATTTTGCTTCTTTATGCTCTCAAAGGAGCTTAATAGACGCAATCAACATACTCATTCTGTGTGTCTACTACACATCTTTGCTTATCACTTTCATCAGAAAAAGTTCAACAAATGAAAGCCATAGAAAATCCTGGATTTTCCTTATTACCTCAAGCTGTTGTGCTATTATTAGCATTGCATTTTTCACTATTGGATTGTCGAATGTTGTAGCTAAATCTGAGCAACTGAAATGGTTAACTTGCGTTATCAGAGGAATCATTTGGATTTCTTTTGCTATTTCTTTGATTGTTCAGAGAGTCAAATGGATAAGAATATTAAACTCTATATGGTGGCTATCTTCTTGTGCATTTGTTTCATCTCTCAACATTGAAGTTCTATTACGAAATCATGCAATTGAAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTGTATTGTGCCTTTAAAAATCTTGCTTATTTCGGAACTCATGGTGTCCAAGAAGGTTTATCTGAGCCACTATTAGCTCAAAAATTTGAAACTAAACAAACAGTTCTTGGTCATGCTACTTTTCTCAGCAGGTTGGTTTTCTCTTGGATGAATTCTTTACTTAGTTTAGGTTACTCAAAGCCACTAGATCTTGAAGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACACGGCCTATCAAAAATTTGTCCATGCCTGGGAATCACTTGTTAGAGAGAGACCAAAGAATAATACAAAAAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAGGAGAAAACATATTAATAGCATTTTATGGATTAATCAGAACTGTTGCTGTTGCTGTTTCACCTCTAATACTCTATGCTTTTGTTAACTACTCAAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCTATAGTTGGTTTTTTGATTGTCAGCAAAGTTTTTGAGTCTTTGTCTCAAAGACATGGGTTTTTTAACGCAAGGAGATCAGGGTTGAAAATGAGATCAGCTTTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAGCTCGGCAAGGACACGCCACGCGGCTGGAGAAATTGTGAACTACATTGCTGTTGATGCTTATAGAATGGGAGAATTTCCGTGGTGGTTTCATATAACATGGACTTATGCATTGCAACTTGTTCTTTCTGTTGGTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTGGTCCCCCTTCTTATATGTGGATTTCTTAATGTACCATTTGCAAGGGTCCTACAAAGTTGCCAGTCAAAGTTTATGATTGCTCAGGACGAGCGTCTTCGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCCAGTCATTACGCGATAAAGAGTTCGTATGGTTGTCTAAGGCACAGATCTTGAAAGCTTCTGGTTCATTTCTTTATTGGATGTCTCCTTCTATTATTTCTGCTGTTGTTTTTCTTGGATGTGCGGTTACCAAGAGTGCACCATTGAATGCTGGAACTGTTTTCACAGTCCTTGCAACACTGAGGAACATGGGAGAGCCTGTTAGAACAGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTTAATAACTTTTTGCTCGATGAAGAACTAAAAAATGATGAGGGTGAAAGAAAATTCAAGGAATATTCGGTTAATGCTGTGAAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTTTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTAGGAGAGATTCCTAAGATATCAGGAACTGTTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATACGAGAAAGCAATTAAAGCATGTGCCTTAGATAAGGATATCAATGATTTCAGTCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACTTGAGTGGAGGACAAAAACAAAGGATTCAATTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCATTAAGAGAGAAAACTGTTATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGACACTATCTTGGTAATGGAGGGAGGAAAAGTTATTCAATCAGGTAGTTATGAGAGCCTCCTAATAGCAGGAGCAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGAATCAAGATAATGAAAATAAAAGAGGTTCTGAAATCGAAGTTTTGTCTAATCCTCAAAACTCTCATGGTTTTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATTGAAGCCATTCTGGGATTATATAAATTATTCCAAAGGGACATTCTTGTTGTGTTTCATCATGTTAGCACATATTGCTTTCATGGCTTTTCAAACGGTATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAGAAGTTAGTAATGCCACCTTGATTGGAATTTATGCATTAGTTTCCTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACATGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGATTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTGACTAGAGCTTCATCAGATTTTAGTATATTGGACTTTGATATACCGTATTCCATCGCCTTTGTGTTATGTGTAGCACTCGAAATTGTGTTGGCAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTTCATCAATATACATTCAGCTATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCACCAGTCATGAATTTTGCATCCGAGACATCCCTTGGAGTGGTTACTGTAAGAGCATTCAACGTGGTAGACACATTTTTCAAAAACTACTTGACACTTGTAGACAAAGATGCTTCATTGTTCTTTCATTCCGTTGCGGCAATGGAATGGGCCATGTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGGTTATTCTACTTCCACATGGATATGTATCCCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGGCCAGATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTGGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCTATTGTGGATAATAACCGGCCACCGTCTTCGTGGCCTTCCAAGGGAAAGATTGATCTTCAAGACTTGGAGATCAGATATCGTCCTAATGCTCCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAAAGGTGATATTCTCATAGATGGGATGAACATTTGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTCTACTCAGATGATGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGGAAGCTACCAAGTCTCCTGGACTCTTCCGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCTACAGATGCCGTTTTACAAAGAGTAATTAGACAAGAATTTGAAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACAGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATATGATGAGCCTTCAAAGCTAATGGAAACCAACTCCTCATTCTCTAAGCTGGTAGCTGAATATTGGACAAGTTGCAGGAAGAATTCATTGCCAAATATGGACAGCAATAATGAGTGA 4407 0.3803 MASFCNSIGEISWLCLKNFDFASLCSQRSLIDAINILILCVYYTSLLITFIRKSSTNESHRKSWIFLITSSCCAIISIAFFTIGLSNVVAKSEQLKWLTCVIRGIIWISFAISLIVQRVKWIRILNSIWWLSSCAFVSSLNIEVLLRNHAIETFDIVQWLVHFLLLYCAFKNLAYFGTHGVQEGLSEPLLAQKFETKQTVLGHATFLSRLVFSWMNSLLSLGYSKPLDLEEIPSLVSEDEANTAYQKFVHAWESLVRERPKNNTKSLVLWSIVRTYLGENILIAFYGLIRTVAVAVSPLILYAFVNYSNRTEPDLRQGLSIVGFLIVSKVFESLSQRHGFFNARRSGLKMRSALMVAVYQKQLKLSSSARTRHAAGEIVNYIAVDAYRMGEFPWWFHITWTYALQLVLSVGILFGVVGIGALPGLVPLLICGFLNVPFARVLQSCQSKFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRDKEFVWLSKAQILKASGSFLYWMSPSIISAVVFLGCAVTKSAPLNAGTVFTVLATLRNMGEPVRTVPEALSIMIQVKVSFDRLNNFLLDEELKNDEGERKFKEYSVNAVKIQDGNFIWDHESLSPTLADVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYESLLIAGAAFELLVSAHKDTITELNQDNENKRGSEIEVLSNPQNSHGFYLTKNQSEGEISSIKGPIGAQLTQEEEKVIGNVGLKPFWDYINYSKGTFLLCFIMLAHIAFMAFQTVSTFWLAIAIEIPEVSNATLIGIYALVSFASAAFVYVRSYMTALLGLKASTAFFSRFTTAIFNAPMLFFDSTPVGRILTRASSDFSILDFDIPYSIAFVLCVALEIVLAICIMVSVTWQVLIVAVPAMVSSIYIQLYYQATARELIRINGTTKAPVMNFASETSLGVVTVRAFNVVDTFFKNYLTLVDKDASLFFHSVAAMEWAMLRIEALQNLTVITASLLVILLPHGYVSPGLVGLSLSYAFTLTGGQIFWSRWFSNLSNYIISVERIKQFIHIPVEPPAIVDNNRPPSSWPSKGKIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSKGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAIEKCQLKETIRKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAVLQRVIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMETNSSFSKLVAEYWTSCRKNSLPNMDSNNE 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00490 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 596 819 IPR003439 GO:0005524
Vifa3g00490 1468 Gene3D - 1199 1450 IPR027417 -
Vifa3g00490 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1450 IPR003439 GO:0005524
Vifa3g00490 1468 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Vifa3g00490 1468 CDD ABCC_MRP_domain2 1214 1434 - -
Vifa3g00490 1468 SMART AAA_5 1242 1427 IPR003593 GO:0016887
Vifa3g00490 1468 SMART AAA_5 623 796 IPR003593 GO:0016887
Vifa3g00490 1468 Pfam ABC transporter transmembrane region 284 542 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00490 1468 Pfam ABC transporter transmembrane region 901 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00490 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 815 IPR027417 -
Vifa3g00490 1468 ProSitePatterns ABC transporters family signature. 721 735 IPR017871 GO:0005524|GO:0016887
Vifa3g00490 1468 FunFam Multidrug resistance protein associated1 575 839 - -
Vifa3g00490 1468 FunFam ABC transporter C family member 3 1199 1450 - -
Vifa3g00490 1468 Gene3D - 604 844 IPR027417 -
Vifa3g00490 1468 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Vifa3g00490 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1452 - -
Vifa3g00490 1468 SUPERFAMILY ABC transporter transmembrane region 887 1198 IPR036640 GO:0005524|GO:0016020
Vifa3g00490 1468 FunFam ABC transporter C family member 10 264 578 - -
Vifa3g00490 1468 Pfam ABC transporter 614 748 IPR003439 GO:0005524
Vifa3g00490 1468 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016020
Vifa3g00490 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1449 IPR027417 -
Vifa3g00490 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00490 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00490 1468 FunFam ABC transporter C family member 5 867 1197 - -
Vifa3g00490 1468 CDD ABCC_MRP_domain1 596 796 - -
Vifa3g00490 1468 Gene3D ABC transporter type 1, transmembrane domain 869 1196 IPR036640 GO:0005524|GO:0016020
Vifa3g00490 1468 Gene3D ABC transporter type 1, transmembrane domain 256 579 IPR036640 GO:0005524|GO:0016020
Vifa3g00490 1468 CDD ABC_6TM_ABCC_D2 898 1191 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00490 Vifa-Chr3 82294361 82300472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00490 596 810 Calmodulin-binding Proteins AT2G36910 27.511 2.98e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00490 - - gmx:100784827 2248.78