Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00473 ATGGGGAGAGGAAAGATTGAGATAAAGAAGATTGAGAATTTGAATAACAGACAGGTTACATTTTCAAAGAGACGCAATGGTTTGATTAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCTGAGGTTGCTGTTTTGATTTATTCTGCCACTGGCAAACTCTATCAATTTTCAAGCACAAGCATGGAGCACACCCTTTCAAGGTATGATAGAGGTCTTGATTTGAATAAAGCAGAGCAACAGCAACATAGTGATCTACCTGCAACACAAGTTGCGGAGCTCGATATTACTACTACCATTCTGCAGGAAGAAGTAACAAAACTTCGTTCGGCTTACTTAAGAATGAGCGGTAAAATGCTTGATGGATTGGGCTTTAAAGAACTGCAACACCTCGAAAATCAACTATGCCAAGGGATATCAGCGGTCAAAAATAAGAAGGAAGAAGTGCTTCTAGAACAAGTTAAGAGATCCAAATTAGAGGAGCAAAAGGCAATGATGGAGAATGAAGCTCTTCGGAAACAGGTTGAAGAGATAGAAAAGAAAAGAAAGAGAGAGTTGGTTGAATATCATAGATTGGATGCAAAAGCAGTTATGAATTATGGTTCAGAGGATGAAGAGATTTCAGATACTTGCTTACAGTTAGGGTTGTCATCAGATTATGGTGCCAAGAGGAAAGCATTGAAGAGAGAACCTTGCAACGACTCAGGAAGTCAAGTGGCTTCACAGTGA 729 0.3951 MGRGKIEIKKIENLNNRQVTFSKRRNGLIKKAKELSVLCDAEVAVLIYSATGKLYQFSSTSMEHTLSRYDRGLDLNKAEQQQHSDLPATQVAELDITTTILQEEVTKLRSAYLRMSGKMLDGLGFKELQHLENQLCQGISAVKNKKEEVLLEQVKRSKLEEQKAMMENEALRKQVEEIEKKRKRELVEYHRLDAKAVMNYGSEDEEISDTCLQLGLSSDYGAKRKALKREPCNDSGSQVASQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00473 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vifa3g00473 242 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Vifa3g00473 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 Coils Coil 142 195 - -
Vifa3g00473 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vifa3g00473 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Vifa3g00473 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa3g00473 242 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g00473 242 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Vifa3g00473 242 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g00473 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00473 Vifa-Chr3 74148048 74149937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00473 1 235 MADS-box Gene Family AT5G13790 44.980 7.07e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa3g00473 K-box 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00473 - - gmx:100792278 320.087