Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00456 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAACCTATTCATTTCTGAGTCAAAGGACAAAAACCAAAAGAAATGGGGGTGGAGATTAGGAAAAATTAAACAGAAGCAGTACCCTACAATTACTGCTACGAAAAGGACATTGATTGAAGCAAATGCAGAACAGAGAAAGCATGCTTTAGTTGTGGCTATTGCAACAGCATCTGCTGCAGAGGCTGCAATCGCTGCTGCACATGTTGCTGCTGAAGTTGTCAAGCTCACAGGCGGTGCCTCTCGTTCGTACTCATATCTCTCCGAAGGAAACAGAAGTTTGGCTGCCATCAAGATTCAAAGCGTTTATCGTGCACATCTAGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAGACTACAGGCCATTATTCGCGGTGAAGCTGTTAGGCATCAATTGTCCAGATCAAATGCAAAAACTCAGAAGGAAAACCAGTACAGAAGCAGCCATACTGAAGAAGAAAACTACAAAAATGGTCAGATAAAACAGGCTGAATGCTGTAGTGAAAGAGCATGGAATTGTAGCTCACACTCAAGAGAAGACATTGAAGCTATATGGTTAAGAAAGCAAGAGGCTATTGTCAAAAGAGACCGCATGAGACAATACTCATCTTCACAAAAAGAGAGAACATTTTCTCAAAGGGTGGAAGAATTTGGAGGAGATAGTTGTCGTACTTTAGGAGAGTGGTTACATGAAGAATTGAGTTCAAAAGTTTCAGTCCAAAGAAAATCATTTTCCCATGTAAAAAGAAGTTCAATTGGTGATGAGAGTTCCATGCCAAACTCTCATGTTTTTCCTAAATACATGTCTCTAACTGAATCTAGCAAAGGAAAAGTAAGGTCTATGAGCACACCAAGAGTGAGAGCAGGATTTTTGGATATGTCTTCCTATCAGAATGAGAACCAATGCATGAATTTCTCAAGTCATCTCAAGGGTCTATATGGGGAAAATTAA 990 0.403 MAKRKSWFGWVKNLFISESKDKNQKKWGWRLGKIKQKQYPTITATKRTLIEANAEQRKHALVVAIATASAAEAAIAAAHVAAEVVKLTGGASRSYSYLSEGNRSLAAIKIQSVYRAHLARKALRALKGVIRLQAIIRGEAVRHQLSRSNAKTQKENQYRSSHTEEENYKNGQIKQAECCSERAWNCSSHSREDIEAIWLRKQEAIVKRDRMRQYSSSQKERTFSQRVEEFGGDSCRTLGEWLHEELSSKVSVQRKSFSHVKRSSIGDESSMPNSHVFPKYMSLTESSKGKVRSMSTPRVRAGFLDMSSYQNENQCMNFSSHLKGLYGEN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00456 329 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Vifa3g00456 329 Gene3D - 101 156 - -
Vifa3g00456 329 MobiDBLite consensus disorder prediction 145 168 - -
Vifa3g00456 329 SMART iq_5 102 124 IPR000048 GO:0005515
Vifa3g00456 329 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Vifa3g00456 329 Pfam Protein of unknown function (DUF4005) 262 301 IPR025064 -
Vifa3g00456 329 PANTHER IQ-DOMAIN 5-RELATED 6 309 - -
Vifa3g00456 329 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00456 Vifa-Chr3 71457219 71458544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00456 1 305 IQD Protein Family AT5G03960 40.934 2.88e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00456 - - gmx:100800767 348.977