Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00437 ATGTCTCTTGAAGAGTCTCTTAGATCTCTCTCCCTTGACTACCTGAACCTCCTGATCAACGGGCAAGCCTTCAGCGACGTGACTTTCCAAGTGGAAGGTCGTTTGGTTCACGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTCTTTTTCAGGAAATTCTTTTGTAGGCCCGATCCACCATCGGGACTAGACCCGACAGGAGGAGGATCATCTCGACAAACAACAGCAAGAACTGGTGTCATCCCGGTGAACTCTGTTGGATACGAGGTGTTCCTCCTACTCTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCACAAACATGAACCTAGACCTAATTGCGGTGAGAGAGGTTGCTGGCATACGCATTGTAGCTCAGCCGTGGATCTTGCCCTTGACACCCTTGCTGCTGCTAGATACTTTGGTGTCGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGCCAGCATGGTAGAGAAAGCCTCCATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGAAAGAAATGAACCAAGTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCAGGTCTTCCACCCGAAATTCTAGCCAAGCATCTTCCTATCGATGTTGTAGCCAAAATTGAAGAGCTTCGTCTCAAATCATCCTTAGCCCGCCGTTCCTTAATGCCACTGCACCACCATCAACATCACCACTACCACGACCTCGGGGATCTAGAGGACCAGAAAATCCGCCGAATGAGGCGTGCTCTTGACTCTTCGGATGTGGAACTGGTCAAACTCATGGTCATGGGAGAAGGCCTAAACCTGGATGAAGCATTGGCATTACACTATGCAGTAGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTCGAACTAGGTGCTGCTGATGTTAACTACCCGGCTGGACCGGCCGGGAAAACTCCGCTTCACGTGGCCGCGGAGATGGTTTCGCCGGAAATGGTGGCAGTTTTGCTTGATCACCATGCAGACCCCACAGTAAGAACCGTTGATGGTGTGACACCTTTGGATATACTCAGAACCCTAACTTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGACTAACCCACATTGAACCAAACAAGTTAAGATTGTGTTTGGAACTTGTTCAATCCGCAGCTCTTGTTCTCTCACGTGAAGAAAACAATAACAACAACAATGCTTCTTCATCATCAGCGCAGATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGCAGTAGTGGAAACAACAATAATAAAAACACTGGTAACCTGAATTCGGATTCAAGATTGGTGTACCTGAACCTTGCTGCTACTCAAATGGGTGGTGGTGGTGATGATGATAGTGGACACAATAGTCAAAGGGAAGCCATGAATCGTCAAGGATCTCAAGCTGGTCATGGATGTGACCCAACAATGTACCATCACTCTCATGATTTCTAA 1464 0.472 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCRPDPPSGLDPTGGGSSRQTTARTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPHKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKKEMNQVWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEELRLKSSLARRSLMPLHHHQHHHYHDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREENNNNNNASSSSAQIYPPMSEDHSSSSSGNNNNKNTGNLNSDSRLVYLNLAATQMGGGGDDDSGHNSQREAMNRQGSQAGHGCDPTMYHHSHDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00437 487 CDD BTB_POZ_NPR_plant 8 160 - -
Vifa3g00437 487 MobiDBLite consensus disorder prediction 394 434 - -
Vifa3g00437 487 SMART ANK_2a 311 340 IPR002110 GO:0005515
Vifa3g00437 487 SMART ANK_2a 276 306 IPR002110 GO:0005515
Vifa3g00437 487 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Vifa3g00437 487 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 486 IPR044284 GO:0099402
Vifa3g00437 487 MobiDBLite consensus disorder prediction 446 478 - -
Vifa3g00437 487 ProSiteProfiles Ankyrin repeat region circular profile. 311 337 - -
Vifa3g00437 487 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Vifa3g00437 487 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Vifa3g00437 487 Gene3D - 244 359 IPR036770 -
Vifa3g00437 487 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Vifa3g00437 487 SMART BTB_4 25 160 IPR000210 GO:0005515
Vifa3g00437 487 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Vifa3g00437 487 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Vifa3g00437 487 SUPERFAMILY POZ domain 9 158 IPR011333 -
Vifa3g00437 487 Pfam Domain of unknown function (DUF3420) 195 253 IPR024228 -
Vifa3g00437 487 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Vifa3g00437 487 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00437 Vifa-Chr3 67524718 67527205 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa3g00437 BTB 3.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00437 K14508 - qsu:112012060 761.525