Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00418 ATGGAAGCAGAAACGGGTGAAAAAGATATGGTGAGGGCAGTTAGTGATGGAAGGAGGAGGAAGAGTTTTGCAGAGTTGATCGAAAAATCGGCAAGCTTCCATGAGAGAAGCGATGAAGAGGAGGCGAAATGGAAGGCGTTATGGAGGCTTCCAACATATGATAGAATGAGAAAAGTGATTTTAAAGCAAGTTCTTGATAATGGAAAAGCAGAGTATGAAGAAGTTGATATCAACAAGCTTGGAGTAGAGGAAAAGAAGCATCTTTTGGAGAGCATAATAAAGACTGCTGAAATAGACAATGAGAATTTTCTCCAAAAAATGAGAGACAGAATTGATAGGGTAGGAATTGAGATTCCTAAGATTGAAGTCCGGTTTGAGAATCTATCAGTTGAAGGGGATGCATATGATGGAACCAGGGCTTTGCCAACACTAATCAATGCTACCCTCAATATAATTGAAGGACTTTTGGGTTATATCAAGATTTTGGCATTTAAGAAAAGGGTTGTGAAGATTCTCAAAGATGTTAGTGGAATTGTAAAACCATCAAGAATGACTTTATTACTGGGACCTCCAGGTTCAGGAAAAACTACACTGCTTCAGGCACTTTCTGGGAAAATGGACAAGGATCTAAGGGTATCAGGAAGAGTGACTTACAATGGTCATGAGTTGTCAGAATTTGTTCCTCAAAGAACATGCGCTTATATTAGTCAGTATGATCTTCATCATGGAGAAATGACAGTGAGAGAGACGCTGGACTTCTCCGGACGCTGCTTAGGTGTTGGAACAAGGTATGATATGTTGATAGAATTATCAAGACGAGAAAAAGCATCAGGTGTCAAACCAGATCCTGAAATAGATGCTTTCATGAAAGCCACGTCAATGGAAGGTCAAGAAACAAGTCTTGTTACAGATTATATTCTCAAGATTCTTGGGTTGGAAATGTGTTCTGATATTTTGGTGGGAGATGAGATGAGAAGGGGCATATCAGGTGGACAAAAGAAGCGTTTAACCACTGGTGAGATGTTGGTGGGACCGGCAAAAGCCCTCTTTATGGATGGAATTTCTACTGGTTTGGATAGTTCTACAACCTTCCAAATTGTCAGGTTTATGAGGCAGATGGTTCATATCATGGATGTCGCTATGATAATCTCACTTCTTCAACCCGCACCAGAAACATATAACCTTTTTGATGACATAGTATTACTTTCAGAAGGTGAGATTGTCTATCAAGGTCCACGTGAGAGTGTTCTAGATTTTTTTCAAAGTGTGGGCTTCAAGTGCCCAGAAAGGAAAGGAATTGCAGACTTTTTACAAGAGGTAACTTCTAGAAAGGACCAAGAACAGTACTGGTTTAGAAGGGACATACCTTATCAGTACGTTAGTGTGCCTGATTTTGTAACCCACTTCAACAATTACCGCATTGGTAAACAACTTCATGAAGAGATTCAAGTTCCCTTTGATTCTAGTAAAACTCATCATGCTGCATTAGTGAAGGAAAAGTATGGAATCCCCAAATGGGAACTTTTCAAGGCATGTTTTTCAAGAGAATGGCTATTCATGAAGCGTAGCTATTTTGTTTACATATTTAAGACTTTTCAGATTACTATCATGTCTATAATTACAATGACAGTATTTTTTAGAACAAAAATGGAGCATGGTCAACTTGAGGATGGGGGGAAATATTATGGTGCACTGTTTTTCAGTCTTATTAATGTGATGTTCAACGGAGCAGCAGAACTTGCAATGACTGTTAACAGAATTCCTGTTTTCTTCAAGCAGAGAGATTTCTTATTTTATCCCGCATGGGCTTTTGCACTGCCCATTTGGGTCCTCAGAATTCCTCTCTCTATAGTGGAATCGGTATTATGGATCATCCTCACTTATTATACTATCGGTTTTGCTCCAGCACCTAGTAGGTTTTTCCGTCAACTACTAGCATTCTTCTGTGTGAATCAAATGGCTCTATCCCTTTTCCGGTTCATTGCTGCAATTGGAAGGACAAGAGTTGTGGCTAACACATTTGCTTCCATAACTATTTTAGTTGTTTTCGTCCTAAGTGGATTTACTGTTTCAAGAGATGATATTGGGCCATGGATGATATGGTGCTATTATGCTTCCCCTATGATGTATGGAATGACTGCAATAAGCATCAATGAATTTCTAGACAAAAGATGGAGTACTCCTAATATGGACCCTAGAATTGATGAACCCACAGTTGGGAAGGCATTACTTAAGGCCAGAGGCATATTTACAGAAGACTATTGGTATTGGATATCTATCGGTGCTCTTATTGGATTTTCTCTACTGTTCAATGTCTGTTTCATTCTTGCTCTAACTTACTTGGACCCATTCAGAAGCTCAAAATCTATCTTGGTGGAACAAGAAGACAATAGGGACACCACACCAGCATCCTCCTCACTGAAAAGAACAGGAGAAGTGACAGAAAGTTCAGCTTCAAATGTTGAATCGTTTGAAGGTGTTGACATGGAAGTAAGAAACAACACACGTAGCTCTATTCCTAAAGCTGCAAAGAATGCAAAATTCAGGAAGGGAATGGTGTTACCCTTCCAGCCTCTGTCACTTGTTTTTGAAAATGTGAATTATCATATCGATATGCCAAATGAAATGAAGAAGCAAGGAATTGAAGCGAATAGACTCCAACTACTAAGAGACATAAGTGGTGCTTTTAGGCCTGGAATTTTAACAGCATTAGTTGGTGTAAGTGGTGCAGGAAAAACAACTTTGATGGATGTGCTTGCAGGAAGGAAAACAAGTGGTCACATAGAAGGAAGTATCAGCATATCGGGATATCACAAGAACCAAGCAACTTTTGCTCGGATTAGCGGTTATTGTGAACAAAATGATATCCACTCTCCCAATATTACAGTTTATGAATCGCTTCTGTTTTCTGCTTGGTTGCGGCTCAGTAAAGAGGTCGATATAGAAACACGAAAGATGTTTATTGAGGAAGTTATAGAGCTGGTTGAGTTACATCTAGTGAGAAATTTCTTAGTCGGCCTTCCTGGAATAGATGGCTTATCAACTGAGCAGAGAAAGAGGCTCACCATTGCTGTAGAATTAGTTGCGAATCCTTCCATTATCTTTATGGATGAACCAACAACTGGTCTTGATGCTAGAGCTGCAGCGGTTGTTATGCGTACAATTAGAAACACAGTGGATACAGGGAGAACTGTTGTGTGCACAATTCACCAACCAAGCATTGATATATTTGAACATTTTGATGAGCTGCTTTTGTTGAAGACGGGTGGACAAGTGATATATGGTGGTCCTCTAGGTCAAAATTCTGAGAAACTTATCGAGTACTTTGAGGCTATTACAGGAATTCCAAAGATTGAAGATGGATACAATCCAGCTACATGGATGCTGGAGATCACTTCTCCTGTGGTTGAGTCTCAGCTTGCTATAGATTTTGCGGAATTATACAATAAGTCAAGCCTTTACGAAAAGAGCCATGAACTTATCAAGGAACTATCCACACCAGCACCTGGAACAAAGGACCTTTACTTTCCATCTAAATACTCACAACCATTTCTTACTCAATGCAATGCTTGCTTCTGGAAACAGTACTGCTCCTATTGGAGGAATCCGCAGTACAATGCCATCAGATTCTTCATCACAATAGTTATTGGCATTTTGTTTGGACTTATTTATTGGAAAAAAGGAGATGAGATACAAAAGGAACAAGACCTTTTAAATCTTGTTGGAGCTATGTATTCCTCGGTTATTTTCCTTGGTGCATCCAACACTAGCAGTGTGCAACCTATTATTGCAATAGAAAGAACAGTTCTCTACCGTGAAAGAGCAGCTGGATTGTACTCAGAACTGCCCTATGCAATTGGTCAGATTGCGATTGAAGTAATTTATGTTTCAATCCAAAGTCTGATATACTCCACTATCCTGTACTGGATGATTGGGTTCGAACCACAAGTCGAAAACTTCTTTTGGTTCTACTTCTTCATATTCATGTCCTTTATCTACTTCACACTATATGGAATGATGACAGTGGCCCTGACACCAAGCCACCAAATTGCTGCCATCGTGATGTCTTTCTTCATCAGTTTTTGGAACCTATTCTCTGGTTTTCTTATTCCAAGAACGCAAATTCCAATATGGTGGAGGTGGTATTATTGGGCATCTCCCGTGGCATGGACTATATATGGACTGGTGACATCCCAGGTGGGTGATAAGAATAGTCCAATAGAGGTACCTGGAGATAGGCTCATGACAGTAAAAGATTATCTTGAGAGGCGATTGGGCTTTGAACATGACTTCCTTGGATTTGTTGTTTTGGCTCATATTGCTTTTTGCCTTCTCTTCCTTTTTGTATTTGCGTACGGCATCAAGTTTTTAAACTTCCAGAAACGATAA 4389 0.3967 MEAETGEKDMVRAVSDGRRRKSFAELIEKSASFHERSDEEEAKWKALWRLPTYDRMRKVILKQVLDNGKAEYEEVDINKLGVEEKKHLLESIIKTAEIDNENFLQKMRDRIDRVGIEIPKIEVRFENLSVEGDAYDGTRALPTLINATLNIIEGLLGYIKILAFKKRVVKILKDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKMDKDLRVSGRVTYNGHELSEFVPQRTCAYISQYDLHHGEMTVRETLDFSGRCLGVGTRYDMLIELSRREKASGVKPDPEIDAFMKATSMEGQETSLVTDYILKILGLEMCSDILVGDEMRRGISGGQKKRLTTGEMLVGPAKALFMDGISTGLDSSTTFQIVRFMRQMVHIMDVAMIISLLQPAPETYNLFDDIVLLSEGEIVYQGPRESVLDFFQSVGFKCPERKGIADFLQEVTSRKDQEQYWFRRDIPYQYVSVPDFVTHFNNYRIGKQLHEEIQVPFDSSKTHHAALVKEKYGIPKWELFKACFSREWLFMKRSYFVYIFKTFQITIMSIITMTVFFRTKMEHGQLEDGGKYYGALFFSLINVMFNGAAELAMTVNRIPVFFKQRDFLFYPAWAFALPIWVLRIPLSIVESVLWIILTYYTIGFAPAPSRFFRQLLAFFCVNQMALSLFRFIAAIGRTRVVANTFASITILVVFVLSGFTVSRDDIGPWMIWCYYASPMMYGMTAISINEFLDKRWSTPNMDPRIDEPTVGKALLKARGIFTEDYWYWISIGALIGFSLLFNVCFILALTYLDPFRSSKSILVEQEDNRDTTPASSSLKRTGEVTESSASNVESFEGVDMEVRNNTRSSIPKAAKNAKFRKGMVLPFQPLSLVFENVNYHIDMPNEMKKQGIEANRLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLAGRKTSGHIEGSISISGYHKNQATFARISGYCEQNDIHSPNITVYESLLFSAWLRLSKEVDIETRKMFIEEVIELVELHLVRNFLVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTIRNTVDTGRTVVCTIHQPSIDIFEHFDELLLLKTGGQVIYGGPLGQNSEKLIEYFEAITGIPKIEDGYNPATWMLEITSPVVESQLAIDFAELYNKSSLYEKSHELIKELSTPAPGTKDLYFPSKYSQPFLTQCNACFWKQYCSYWRNPQYNAIRFFITIVIGILFGLIYWKKGDEIQKEQDLLNLVGAMYSSVIFLGASNTSSVQPIIAIERTVLYRERAAGLYSELPYAIGQIAIEVIYVSIQSLIYSTILYWMIGFEPQVENFFWFYFFIFMSFIYFTLYGMMTVALTPSHQIAAIVMSFFISFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKNSPIEVPGDRLMTVKDYLERRLGFEHDFLGFVVLAHIAFCLLFLFVFAYGIKFLNFQKR 1462
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00418 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 429 IPR003439 GO:0005524
Vifa3g00418 1462 MobiDBLite consensus disorder prediction 795 820 - -
Vifa3g00418 1462 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 24 1462 - -
Vifa3g00418 1462 SMART AAA_5 898 1090 IPR003593 GO:0016887
Vifa3g00418 1462 SMART AAA_5 181 406 IPR003593 GO:0016887
Vifa3g00418 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 870 1113 IPR003439 GO:0005524
Vifa3g00418 1462 FunFam ABC transporter G family member 34 159 463 - -
Vifa3g00418 1462 Pfam ABC transporter 172 352 IPR003439 GO:0005524
Vifa3g00418 1462 CDD ABCG_PDR_domain2 858 1096 IPR034003 -
Vifa3g00418 1462 MobiDBLite consensus disorder prediction 796 820 - -
Vifa3g00418 1462 Pfam ABC-2 type transporter 387 441 IPR043926 GO:0140359
Vifa3g00418 1462 Pfam ABC-2 type transporter 1070 1141 IPR043926 GO:0140359
Vifa3g00418 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1097 IPR027417 -
Vifa3g00418 1462 Pfam ABC-2 type transporter 508 720 IPR013525 GO:0016020|GO:0140359
Vifa3g00418 1462 Pfam ABC-2 type transporter 1186 1398 IPR013525 GO:0016020|GO:0140359
Vifa3g00418 1462 Pfam Plant PDR ABC transporter associated 727 790 IPR013581 -
Vifa3g00418 1462 Gene3D - 862 1111 IPR027417 -
Vifa3g00418 1462 FunFam ABC transporter G family member 40 875 1105 - -
Vifa3g00418 1462 Gene3D - 161 456 IPR027417 -
Vifa3g00418 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 208 IPR027417 -
Vifa3g00418 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 428 IPR027417 -
Vifa3g00418 1462 Pfam ABC-transporter N-terminal 91 147 IPR029481 -
Vifa3g00418 1462 Pfam ABC transporter 889 1040 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g00418 Vifa-Chr3 58917039 58925492 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00418 886 1073 Calmodulin-binding Proteins AT2G36910 26.238 1.38e-06 51.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00418 K08711 - gmx:100788067 2409.79