Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00415 ATGGACAAAGATTTCAAACCACACTTGGTCATGGTATTAGGCCAGCTGGGCTATACATTGTTATATTTTATCACTGAAGCTTCCTTCAATCATGGAATGAGTCCTTACGTGTACGTTACCTATCGCCACGTTGTCGCTGGGTTTGTCATGCTTCCTTTTGCATACTTTCTAGAAAGAAATATAAGACCAAAGCTGACATTTTCTCTTTTTATGGAGTTTTTTGTGCTTTCAATCTTAGGGATTAGTTTGACTCTGAATATGTACTTTGCAAGCTTGAAATACACTTCTCCAACATTTATTTCTTCCATGGTCAACAGCATAGCTTCCCTTACCTTCATTATTGCAGTGGCTTTCGGGTTTGAGGTTCTTGATCTTCGAAATCCTCACGGTATAGCAAAAGTGCTTGGGACCTTCATATCCTTAGCTGGCGTTATGACCATGACACTATACAGAGGACCTACTATGAGCAATTTGTGGCGTCCCCTAATTAATATTCAACCAAAAAGTGATGATTCTGTCTATGCGAGCGAGTTAAAGGGTTCACTTCTTACAGTTTCATGCTGTGTTACATGGTCTATATGGTTCATTATGCAGGCATCCACTCTAAAAAGATACCCTGCTCAATTATCACTCACTACATGGATGTGTTTTATAGGAGCAGCACAATCAGCAGTTTTCACAGTGATAGCAGAACATAATAACCATACAGCATGGATTATAGGGCTCAACATTGACTTGTTCTCCACAATATATGGGGGAATTGTTGTTAGTGGTTTGTTGATGTACATTCAACTATGGTGCACTGAGAAAAAAGGGCCAGTTTTTGTCACAATGTTTAACCCTCTTAGTACCATATTTGTGGCAATTCTGTCATTCTCTGTCTTTGGTGAAAAACTTTATTTGGGCAGCATCATAGGTTCATTTATCGTCATCATGGGTCTGTACTTGTTGCTGTGGGGGAAAGAAGGAGACAGAGAAGTTGATTTCAAGACCAAAAGTAAATTGCGGTGCAATAGGGAAAATCCAGAATGCAGAATATAG 1041 0.3939 MDKDFKPHLVMVLGQLGYTLLYFITEASFNHGMSPYVYVTYRHVVAGFVMLPFAYFLERNIRPKLTFSLFMEFFVLSILGISLTLNMYFASLKYTSPTFISSMVNSIASLTFIIAVAFGFEVLDLRNPHGIAKVLGTFISLAGVMTMTLYRGPTMSNLWRPLINIQPKSDDSVYASELKGSLLTVSCCVTWSIWFIMQASTLKRYPAQLSLTTWMCFIGAAQSAVFTVIAEHNNHTAWIIGLNIDLFSTIYGGIVVSGLLMYIQLWCTEKKGPVFVTMFNPLSTIFVAILSFSVFGEKLYLGSIIGSFIVIMGLYLLLWGKEGDREVDFKTKSKLRCNRENPECRI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00415 346 Pfam EamA-like transporter family 27 147 IPR000620 GO:0016020
Vifa3g00415 346 Pfam EamA-like transporter family 179 318 IPR000620 GO:0016020
Vifa3g00415 346 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 151 - -
Vifa3g00415 346 SUPERFAMILY Multidrug resistance efflux transporter EmrE 215 321 - -
Vifa3g00415 346 PANTHER WAT1-RELATED PROTEIN 6 325 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00415 Vifa-Chr3 58081723 58083237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00415 6 343 Nodulin-like Gene Family AT5G07050 41.787 6.75e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00415 - - gmx:100527877 541.191