Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00414 ATGAACGTTCTACAACAACCAGGCTCATTAAGCCAACTTGATTGGGAATTTACCATCGACTATTTACCGGAATGTCCAGTCACCGATTTTTTTCCGGATGAAATTAAAGCTCCTGTTTCCATCGCAGACACTCCCTCGCCAAATCCATCTCTATCGGAGATTGAGAACTTGCTCATGGAAGATTGCGACGACGGAGAGGGAACCGCGTCGCCGGGCTCCGACTATGATAAATTTCTGGAGGATATTCTCGTTCAGCCGCATCCTCAATCGGACGAAAGTGACAGAGTTGATCCATTAACGCCTGAAGAGCTTCCTCGTGAACCCGTCTCAAAGAAGCAAATTAGGCAGATGAGGAACAGGGATGCTGCTGTGAAATCAAGAGAGAGGAAGAAGATGTATGTGAAAAACCTTGAGTCAAAGAGTAGGTATTTTGAAGGGGAACGCAGAAGGTTGGAGCATCTGCTCCAGTGCTGTTATGCTGAGAATCATGCTTTGCGGTTATGTTTGCAATCGCGTGGTGCATTTGCTGCTTCCATCACCATGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGCTGGGTTCCCTGCTATGGTTCATGGGCATCATGTGCCAACTCAGTCTGCCCCTTTTACTGTGGCTAACAGTGTTACCTCCAAGAGAAAACATGGAACACAAAAGTCTAAGAAGGGTGGCTCTAAAAAGGCCAAATAGTAATATCAAGTATTTCCTGACTCAGTCGTTTGTAAAGAGTAGAAGATGCCAAGCTTCAAGATCGAAGATGAAAGTTGATTTTATTGTGTTCTAA 810 0.4556 MNVLQQPGSLSQLDWEFTIDYLPECPVTDFFPDEIKAPVSIADTPSPNPSLSEIENLLMEDCDDGEGTASPGSDYDKFLEDILVQPHPQSDESDRVDPLTPEELPREPVSKKQIRQMRNRDAAVKSRERKKMYVKNLESKSRYFEGERRRLEHLLQCCYAENHALRLCLQSRGAFAASITMQESAVLLLESLLLGSLLWFMGIMCQLSLPLLLWLTVLPPRENMEHKSLRRVALKRPNSNIKYFLTQSFVKSRRCQASRSKMKVDFIVF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00414 269 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 115 129 IPR004827 GO:0003700|GO:0006355
Vifa3g00414 269 SUPERFAMILY Leucine zipper domain 111 168 IPR046347 GO:0003700|GO:0006355
Vifa3g00414 269 CDD bZIP_HY5-like 112 163 - -
Vifa3g00414 269 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
Vifa3g00414 269 MobiDBLite consensus disorder prediction 87 121 - -
Vifa3g00414 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 152 IPR004827 GO:0003700|GO:0006355
Vifa3g00414 269 MobiDBLite consensus disorder prediction 86 121 - -
Vifa3g00414 269 Gene3D - 110 171 - -
Vifa3g00414 269 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 89 235 - -
Vifa3g00414 269 Pfam bZIP transcription factor 110 153 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00414 124 186 bZIP Transcription Factor Family AT1G42990 53.125 4.06e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g00414 bZIP_1 1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00414 - - pvu:PHAVU_007G247600g 263.848