Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00404 ATGAAAGATTCTAAAGCCTTTGGAAAGAAGCGTCAAGGATGGTTATCTACCTCACCACACGTAACTTGTGAGGACCTTTCATGTTCTTCTGAAAAAACATGGAAAGAAAAGATTTTGAAACAGAAAAAGGTGAAAAAAGGCTTGGAAATTTTTAGGGACTTGTCTCACAAGCTCTATTGTGAGTACAAGTCAAGTGGAGTTAAAAACTTGAGAGCCAAAACAAAAGCTTTGGTAGAAGCTGCTATGTTTATGAAAGAGAAACATCAATGGGAAAACAGTAGAAAGAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGACCACTTTCAATACAGGCCTGAACTTGTTGTCATTGGTCTCCATCAACAACTCTGCGGTGGTATTGATTTTTTGGGTAAAGGTCAGTATTCTTTGGCAACTAGTATTGTTGTAGGTGATAAGTATGCTAATGTTATCAAGTCTAGTGGTTGTTTGGTTTATGAAGGTCAAGGTAGTAACCCTAATGTAAAAACAACAGCCGCGCCTCCTCGTGATCAGAAACTGGAAGGGGGGAATCTTGCTTTGATGAATAGTGTGAATGCTAGGAGTCCTGTTAGGGTTATATTGAAGGTTTCTGGGAAATTTAATGGGATGGAAGAATGGAAGAACAATGTTTCTGATTATTCATATGTATATGATGGCTTGTATTCTGTTGACAGGATGACTCAAGAAAGGGGACAATTTGGAAAACTTGTGTTCAAGTTTGTACTGAATAGAATTACGGATCAATCCGTAAGTGTTTCCTCTCGGGATGTTGGTAAAGAAAAAGAAACTTTCTCGAAGAGACAGAAGTCTAAGGGTCGTGTTCTCGACAAGGATGTTGTTCGAATCAATGATATTTCAGAGGGGAAAGAAAAATTTGCAATTCGAGTTGTAACACCAATAAGTTGTGTGGAGAAACCTAAACCCTTTGGCTACCTAGTCAAAATGAGTTATCCAAAGATGAATCATTCAACACTACTACTAGGTGGTGGATGTAATTGTGAAAATGCATGTGTTGATTCTCTTAAATGTGTTTGCATAGCTAAGAATAATGGTGGGACAATTGCATATGGTGGTAACAAAAGACTGGTTTCTCATATGAAACCATCCTTAATATACGAGTGTGGCCCTTCTTGCGTGTGTTCATCGTCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAGTTCCAACTAGAAATCTTCAAAACAAAATCGAAGGGGTGGGGTGTTAGAACGCGATCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTAATTGGAGAGCTTGTTCATCAAAACAATGGAAAAGATGGATCAAATGTACATGTTGATGACTATATATTTAATATAGGTGGTGGGTTGATTGATGCAAGTAGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTGTCCTAACCTATGTATGAAAGATGTTATGTATGATCACAAGGATGAGAGAGTAGCACACAAAATGTTGTTTGCTTTAAAGGACATAGCTGCAGGTAGAGAGGTTAGTTATGATTACAATTGCTGCAAGGGGAATATCAAGGGATTGAGTAATTTTTGCTGCTGTGGTTCATCACAATGCAAGGGATATATTTACAATTGA 1635 0.3804 MKDSKAFGKKRQGWLSTSPHVTCEDLSCSSEKTWKEKILKQKKVKKGLEIFRDLSHKLYCEYKSSGVKNLRAKTKALVEAAMFMKEKHQWENSRKRLGHVDGIEVGDHFQYRPELVVIGLHQQLCGGIDFLGKGQYSLATSIVVGDKYANVIKSSGCLVYEGQGSNPNVKTTAAPPRDQKLEGGNLALMNSVNARSPVRVILKVSGKFNGMEEWKNNVSDYSYVYDGLYSVDRMTQERGQFGKLVFKFVLNRITDQSVSVSSRDVGKEKETFSKRQKSKGRVLDKDVVRINDISEGKEKFAIRVVTPISCVEKPKPFGYLVKMSYPKMNHSTLLLGGGCNCENACVDSLKCVCIAKNNGGTIAYGGNKRLVSHMKPSLIYECGPSCVCSSSCINRVSQCGIQFQLEIFKTKSKGWGVRTRSFIPSGSFVCELIGELVHQNNGKDGSNVHVDDYIFNIGGGLIDASRHGNIGRFINHSCCPNLCMKDVMYDHKDERVAHKMLFALKDIAAGREVSYDYNCCKGNIKGLSNFCCCGSSQCKGYIYN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00404 544 SUPERFAMILY SET domain 282 533 IPR046341 -
Vifa3g00404 544 ProSiteProfiles Pre-SET domain profile. 337 400 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g00404 544 SMART set_7 403 524 IPR001214 GO:0005515
Vifa3g00404 544 Pfam SAD/SRA domain 97 256 IPR003105 -
Vifa3g00404 544 SMART G9a_1 93 256 IPR003105 -
Vifa3g00404 544 ProSiteProfiles Post-SET domain profile. 531 543 IPR003616 -
Vifa3g00404 544 Gene3D - 79 276 IPR036987 -
Vifa3g00404 544 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 34 537 - -
Vifa3g00404 544 Pfam SET domain 414 518 IPR001214 GO:0005515
Vifa3g00404 544 Pfam Pre-SET motif 293 395 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g00404 544 ProSiteProfiles YDG domain profile. 98 252 IPR003105 -
Vifa3g00404 544 ProSiteProfiles SET domain profile. 403 518 IPR001214 GO:0005515
Vifa3g00404 544 SUPERFAMILY PUA domain-like 80 257 IPR015947 -
Vifa3g00404 544 Gene3D SET domain 284 542 IPR046341 -
Vifa3g00404 544 SMART preset_2 290 387 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00404 Vifa-Chr3 56981986 56983704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00404 92 540 Su(var)3-9 homologs AT1G73100 33.943 1.52e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g00404 SAD_SRA 2.4e-37 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00404 - - gmx:100807574 563.918