LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g00404	ATGAAAGATTCTAAAGCCTTTGGAAAGAAGCGTCAAGGATGGTTATCTACCTCACCACACGTAACTTGTGAGGACCTTTCATGTTCTTCTGAAAAAACATGGAAAGAAAAGATTTTGAAACAGAAAAAGGTGAAAAAAGGCTTGGAAATTTTTAGGGACTTGTCTCACAAGCTCTATTGTGAGTACAAGTCAAGTGGAGTTAAAAACTTGAGAGCCAAAACAAAAGCTTTGGTAGAAGCTGCTATGTTTATGAAAGAGAAACATCAATGGGAAAACAGTAGAAAGAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGACCACTTTCAATACAGGCCTGAACTTGTTGTCATTGGTCTCCATCAACAACTCTGCGGTGGTATTGATTTTTTGGGTAAAGGTCAGTATTCTTTGGCAACTAGTATTGTTGTAGGTGATAAGTATGCTAATGTTATCAAGTCTAGTGGTTGTTTGGTTTATGAAGGTCAAGGTAGTAACCCTAATGTAAAAACAACAGCCGCGCCTCCTCGTGATCAGAAACTGGAAGGGGGGAATCTTGCTTTGATGAATAGTGTGAATGCTAGGAGTCCTGTTAGGGTTATATTGAAGGTTTCTGGGAAATTTAATGGGATGGAAGAATGGAAGAACAATGTTTCTGATTATTCATATGTATATGATGGCTTGTATTCTGTTGACAGGATGACTCAAGAAAGGGGACAATTTGGAAAACTTGTGTTCAAGTTTGTACTGAATAGAATTACGGATCAATCCGTAAGTGTTTCCTCTCGGGATGTTGGTAAAGAAAAAGAAACTTTCTCGAAGAGACAGAAGTCTAAGGGTCGTGTTCTCGACAAGGATGTTGTTCGAATCAATGATATTTCAGAGGGGAAAGAAAAATTTGCAATTCGAGTTGTAACACCAATAAGTTGTGTGGAGAAACCTAAACCCTTTGGCTACCTAGTCAAAATGAGTTATCCAAAGATGAATCATTCAACACTACTACTAGGTGGTGGATGTAATTGTGAAAATGCATGTGTTGATTCTCTTAAATGTGTTTGCATAGCTAAGAATAATGGTGGGACAATTGCATATGGTGGTAACAAAAGACTGGTTTCTCATATGAAACCATCCTTAATATACGAGTGTGGCCCTTCTTGCGTGTGTTCATCGTCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAGTTCCAACTAGAAATCTTCAAAACAAAATCGAAGGGGTGGGGTGTTAGAACGCGATCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTAATTGGAGAGCTTGTTCATCAAAACAATGGAAAAGATGGATCAAATGTACATGTTGATGACTATATATTTAATATAGGTGGTGGGTTGATTGATGCAAGTAGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTGTCCTAACCTATGTATGAAAGATGTTATGTATGATCACAAGGATGAGAGAGTAGCACACAAAATGTTGTTTGCTTTAAAGGACATAGCTGCAGGTAGAGAGGTTAGTTATGATTACAATTGCTGCAAGGGGAATATCAAGGGATTGAGTAATTTTTGCTGCTGTGGTTCATCACAATGCAAGGGATATATTTACAATTGA	1635	0.3804	MKDSKAFGKKRQGWLSTSPHVTCEDLSCSSEKTWKEKILKQKKVKKGLEIFRDLSHKLYCEYKSSGVKNLRAKTKALVEAAMFMKEKHQWENSRKRLGHVDGIEVGDHFQYRPELVVIGLHQQLCGGIDFLGKGQYSLATSIVVGDKYANVIKSSGCLVYEGQGSNPNVKTTAAPPRDQKLEGGNLALMNSVNARSPVRVILKVSGKFNGMEEWKNNVSDYSYVYDGLYSVDRMTQERGQFGKLVFKFVLNRITDQSVSVSSRDVGKEKETFSKRQKSKGRVLDKDVVRINDISEGKEKFAIRVVTPISCVEKPKPFGYLVKMSYPKMNHSTLLLGGGCNCENACVDSLKCVCIAKNNGGTIAYGGNKRLVSHMKPSLIYECGPSCVCSSSCINRVSQCGIQFQLEIFKTKSKGWGVRTRSFIPSGSFVCELIGELVHQNNGKDGSNVHVDDYIFNIGGGLIDASRHGNIGRFINHSCCPNLCMKDVMYDHKDERVAHKMLFALKDIAAGREVSYDYNCCKGNIKGLSNFCCCGSSQCKGYIYN	544

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa3g00404	544	SUPERFAMILY	SET domain	282	533	IPR046341	-
Vifa3g00404	544	ProSiteProfiles	Pre-SET domain profile.	337	400	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
Vifa3g00404	544	SMART	set_7	403	524	IPR001214	GO:0005515
Vifa3g00404	544	Pfam	SAD/SRA domain	97	256	IPR003105	-
Vifa3g00404	544	SMART	G9a_1	93	256	IPR003105	-
Vifa3g00404	544	ProSiteProfiles	Post-SET domain profile.	531	543	IPR003616	-
Vifa3g00404	544	Gene3D	-	79	276	IPR036987	-
Vifa3g00404	544	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	34	537	-	-
Vifa3g00404	544	Pfam	SET domain	414	518	IPR001214	GO:0005515
Vifa3g00404	544	Pfam	Pre-SET motif	293	395	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g00404	Vifa-Chr3	56981986	56983704	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g00404	92	540	Su(var)3-9 homologs	AT1G73100	33.943	1.52e-70	237

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Vifa3g00404		SAD_SRA	2.4e-37	CL0178

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g00404	-		-	gmx:100807574	563.918

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