Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00399 ATGGGTTCGGTGGAGAACTACCACGTGATCGAGCTCGTCGGAGAAGGTTCCTTCGGCAAAGTCTACAAAGGGAGACGCAAGCACACTGGACAGACTGTTGCCATGAAGTTCATAATGAAGCACGGTAAAACTGAAAAGGACATTCACAATTTGAGACAAGAAATTGAGATATTAAGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCTTTTGAAAGCCCACAAGAGTTTTGTGTTGTCACAGAATTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGACAAATGCCTTCCCGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAAAATATCCTCATTGGTTCTGGATCTATTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCGATGTCCACAAACACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAACTTGTCCGGGAACAACCTTACAACCACACAGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTTGTAGGCCAACCACCATTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGACCCGGTTAAATATCCCGATAGCATGACTCCAAACTTCAAAAGCTTTTTAAAGGGTTTACTTAACAAGGCACCGGAAAGTCGACTAACTTGGCCTGCTCTTCTTGAACACCCATTTGTTAAAGAAACTAACAACGAAATTCAGGACAGGGAACTGCGTGAGATAAGTGGTTCGCCAAAGGACAGTGATACAACACAGAGGGTTGAAAGAAAAACCATTCAAACTTCAACAGGAAAAAACAATCACAAAGCAGGTTCGGCGGAGCATATTTCTTCACCCCTTCAGAATGAAGCTCAGTTAAATGGTCCTAACATGAACAAAACCAATTCTAAGGTGCTTGATGAGTCTCCTGGCTTTTCGAATCAAAATGATGTAGCAGAGTCAGGTTGCCAAAGACTGGACAAACTTGAAAGTAACTCTCGCACTGTCAAAGGTGCAAAAGTAATTGGTCAAGACAATGAAGCATTTGAATTTGTTCTGCAACCCCTGAAAAGATGGTCGAAGGGATCTCAAAATATTTGCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCATTAAGAATTCTCTCAAATCTAGTTGATGCCGGTGTCTTCAGTTCTAATGGGCAAATAGACGAACTCATAAGTGAGCTTCTTTTGTTTACCAGATCTGTTGTAGCAATGAAGTCTGCTGAAGTTTTTGACCTGTTAACAAAGGGTTTCTCGATCACCAAAATTTTGCTTGATATTGGTGGGAAATTCTGTTCAACTTCATATTCAAATCACTGGGTTGAATTGATTGAAATCTATTCTCAGGTTGTAACTTCTATAAATGATGCATCTGGAAGAGTTCTGTATGAGTCTAGTGCCTGCATTACAGTCATGTTGTCTAAGGTTACTCAGGTCTTATTGCAGAGGACGGAAATTATGGATCACAGACAAGATCCCTTGTTTGATGAAGAATCAACAAAAATGGTTGATGTAATGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCAGTGTACTATTGTTTTCACCAACGGATTGAGTCTGCAACGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCATCCGCCCTTTGTGGTCTGCCCAGTTCCCTTCCTATAACTACTGTTGTAAGTGGTGGTGGTGATGGAACTATTGTTTCAGAGATTTTCTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATAGTGTAGAACCAAATAACACTAAATGTAAATTTGCAAATCCTTCTGCTCTGATTCGTCATTCATGTACCATTCTCACAATAATTGCACAAAGTTTGAAATCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCACCTCACCAAAGAAGCAGCTTGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCCATGTTGGCTCTGGCATCCATTCTTTCACTCGAATCTGTGACTTCGGTTGAGTCTTCGATATCTGAAATTGCTATGCCCTTAATTCCCCGAAGTTCTACACTAAGTGACCATCTTAAATTTTCATCAGGAAATGAAAATGAACTGGACCATGGAAATTTTAATGGGAAGCTCCCATATTGGCTAGGGGTAAAAGATGGGTGTGTTGGCCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTACTTCTTATCGGCTTATTAAGCAATGGGTTTTTAAATGCTTCTCAAGAAAACGAGTGCCTAAATGATAAAGTTGGATTGTCTCCTATCGGTGTTGTGTGCACAGTTTCATCATTATGTCACTGTCTCTCTGGTGGCGTTTTGATTTTTCGTCAAATTTTGATTAGGATTGAACATGTTAAGCTCATATCCAACTTAATATGTGATGTTCATCTTAAGTTGATAAAATTCTGGACCGGACCTGGTGGAGGGCGAGCAGGAGTCCGAGATCTAATAAATGCAGTTATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCGGGCTTGCCATCAGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATGCTGGTTCTCCTGGTCAGAGAGTATGCATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGGGAAAATACATTAAGATCCTTATGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTAGATCATATGGAGTTGAATGATATGGGTAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCTAATAGGATGCAAAGGTTGTTTGACCTTTCGGGTCCAAAAGAGGTTATGCTGGATGCTCTTATGATCATTTCTGATCTTTCTCGTATGGACAAGGGATTCTATGAATACATTAAAGGTGCTTCTGTTTTGGAGTTCTTAAAAAGTTTTCTTTCACATGAGGATCCGAATGTGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGCCGTCACAGTGCCTTTTTTTACAGTTCTCTTGCAAGATATCAAATCGTTAGTATCCTTATTGACCGATGCTCTGATCCAGACAAACGAACAAGGAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGATGTGTTGTATGAAGAGTTGAGGAGGTCGATTCCTCATCTGGCAAATTTGTTGGAAAAAGCAGAGGAGGATAAGACCAAGGCAAATGCAGCAGGCGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGAAGACATTGTGTCTAAAGGAGCGGTTCAGTCTCTCCTGAAGTTAATTTCCGATTATGCGGCATCAGCACTAAGCCCAAGCAGAAATGATTCAACAAACGAGTCTCCTTTAAAGATTGCTCTCTTTTCCCTTGCAAAGATGTGTGCCCATCCACTCTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTAATTGGAAGACTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGTATCAGTGATCATTAACAAAGTTGCCGAACCTTGA 3756 0.4089 MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMTPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETNNEIQDRELREISGSPKDSDTTQRVERKTIQTSTGKNNHKAGSAEHISSPLQNEAQLNGPNMNKTNSKVLDESPGFSNQNDVAESGCQRLDKLESNSRTVKGAKVIGQDNEAFEFVLQPLKRWSKGSQNICSDQDLPASNQSLRILSNLVDAGVFSSNGQIDELISELLLFTRSVVAMKSAEVFDLLTKGFSITKILLDIGGKFCSTSYSNHWVELIEIYSQVVTSINDASGRVLYESSACITVMLSKVTQVLLQRTEIMDHRQDPLFDEESTKMVDVMTRAFLRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPSALCGLPSSLPITTVVSGGGDGTIVSEIFSVLSICSSSLNKDSVEPNNTKCKFANPSALIRHSCTILTIIAQSLKSTGRNSAIFMLTTSPKKQLARLSVLAHHVSYDDKTKASFQLQSASAMLALASILSLESVTSVESSISEIAMPLIPRSSTLSDHLKFSSGNENELDHGNFNGKLPYWLGVKDGCVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFLNASQENECLNDKVGLSPIGVVCTVSSLCHCLSGGVLIFRQILIRIEHVKLISNLICDVHLKLIKFWTGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNAGSPGQRVCMEDKDTVKAIEEDMGKYIKILMEVGVPSIILRCLDHMELNDMGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMQRLFDLSGPKEVMLDALMIISDLSRMDKGFYEYIKGASVLEFLKSFLSHEDPNVRAKACSALGNMCRHSAFFYSSLARYQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPHLANLLEKAEEDKTKANAAGALSNLVRNSDRLCEDIVSKGAVQSLLKLISDYAASALSPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYVSVIINKVAEP 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00399 1251 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00399 1251 FunFam Aurora kinase A 2 89 - -
Vifa3g00399 1251 Gene3D - 977 1248 IPR011989 -
Vifa3g00399 1251 PANTHER PROTEIN KINASE RELATED 4 517 - -
Vifa3g00399 1251 FunFam Serine/threonine-protein kinase 36 4 325 - -
Vifa3g00399 1251 SMART arm_5 1031 1071 IPR000225 GO:0005515
Vifa3g00399 1251 SMART arm_5 1155 1209 IPR000225 GO:0005515
Vifa3g00399 1251 SMART arm_5 1114 1154 IPR000225 GO:0005515
Vifa3g00399 1251 MobiDBLite consensus disorder prediction 268 342 - -
Vifa3g00399 1251 SUPERFAMILY Protein kinase-like (PK-like) 5 283 IPR011009 -
Vifa3g00399 1251 Coils Coil 1119 1139 - -
Vifa3g00399 1251 Coils Coil 41 61 - -
Vifa3g00399 1251 Pfam HEAT repeats 1045 1149 - -
Vifa3g00399 1251 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00399 1251 FunFam Serine/threonine-protein kinase TIO 978 1247 - -
Vifa3g00399 1251 SUPERFAMILY ARM repeat 944 1248 IPR016024 -
Vifa3g00399 1251 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Vifa3g00399 1251 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00399 1251 CDD STKc_STK36 5 257 - -
Vifa3g00399 1251 MobiDBLite consensus disorder prediction 268 285 - -
Vifa3g00399 1251 Gene3D Transferase(Phosphotransferase) domain 1 2 330 - -
Vifa3g00399 1251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g00399 1251 MobiDBLite consensus disorder prediction 286 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00399 Vifa-Chr3 56672692 56695339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00399 4 246 AGC Kinase Gene Family AT3G08720 38.367 2.63e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vifa3g00399 Pkinase 5.5e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00399 K06228 - gmx:100792102 1687.16