Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00398 ATGGGTTCGGTGGAGAACTACCACGTGATCGAGCTCGTCGGAGAAGGTTCCTTCGGCAAAGTCTACAAAGGGAGACGCAAGCACACTGGACAGACTGTTGCCATGAAGTTCATAATGAAGCACGGTAAAACTGAAAAGGACATTCACAATTTGAGACAAGAAATTGAGATATTAAGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCTTTTGAAAGCCCACAAGAGTTTTGTGTTGTCACAGAATTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGACAAATGCCTTCCCGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAAAATATCCTCATTGGTTCTGGATCTATTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCGATGTCCACAAACACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAACTTGTCCGGGAACAACCTTACAACCACACAGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTTGTAGGCCAACCACCATTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGACCCGGTTAAATATCCCGATAGCATGACTCCAAACTTCAAAAGCTTTTTAAAGGGTTTACTTAACAAGGCACCGGAAAGTCGACTAACTTGGCCTGCTCTTCTTGAACACCCATTTGTTAAAGAAACTAACAACGAAATTCAGGACAGGGAACTGCGTGAGATAAGTGGTTCGCCAAAGGACAGTGATACAACACAGAGGGTTGAAAGAAAAACCATTCAAACTTCAACAGGTTCGGCGGAGCATATTTCTTCACCCCTTCAGAATGAAGCTCAGTTAAATGGTCCTAACATGAACAAAACCAATTCTAAGGTGCTTGATGAGTCTCCTGGCTTTTCGAATCAAAATGATGTAGCAGAGTCAGGTTGCCAAAGACTGGACAAACTTGAAAGTAACTCTCGCACTGTCAAAGGTGCAAAAGTAATTGGTCAAGACAATGAAGCATTTGAATTTGTTCTGCAACCCCTGAAAAGATGGTCGAAGGGATCTCAAAATATTTGCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCATTAAGAATTCTCTCAAATCTAGTTGATGCCGGTGTCTTCAGTTCTAATGGGCAAATAGACGAACTCATAAGTGAGCTTCTTTTGTTTACCAGATCTGTTGTAGCAATGAAGTCTGCTGAAGTTTTTGACCTGTTAACAAAGGGTTTCTCGATCACCAAAATTTTGCTTGATATTGGTGGGAAATTCTGTTCAACTTCATATTCAAATCACTGGGTTGAATTGATTGAAATCTATTCTCAGGTTGTAACTTCTATAAATGATGCATCTGGAAGAGTTCTGTATGAGTCTAGTGCCTGCATTACAGTCATGTTGTCTAAGGTTACTCAGGTTCAGGTCTTATTGCAGAGGACGGAAATTATGGATCACAGACAAGATCCCTTGTTTGATGAAGAATCAACAAAAATGGTTGATGTAATGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCAGTGTACTATTGTTTTCACCAACGGATTGAGTCTGCAACGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCATCCGCCCTTTGTGGTCTGCCCAGTTCCCTTCCTATAACTACTGTTGTAAGTGGTGGTGGTGATGGAACTATTGTTTCAGAGATTTTCTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATAGTGTAGAACCAAATAACACTAAATGTAAATTTGCAAATCCTTCTGCTCTGATTCGTCATTCATGTACCATTCTCACAATAATTGCACAAAGTTTGAAATCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCACCTCACCAAAGAAGCAGCTTGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCCATGTTGGCTCTGGCATCCATTCTTTCACTCGAATCTGTGACTTCGGTTGAGTCTTCGATATCTGAAATTGCTATGCCCTTAATTCCCCGAAGTTCTACACTAAGTGACCATCTTAAATTTTCATCAGGAAATGAAAATGAACTGGACCATGGAAATTTTAATGGGAAGCTCCCATATTGGCTAGGGGTAAAAGATGGGTGTGTTGGCCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTACTTCTTATCGGCTTATTAAGCAATGGGTTTTTAAATGCTTCTCAAGAAAACGAGTGCCTAAATGATAAAGTTGGATTGTCTCCTATCGGTGTTGTGTGCACAGTTTCATCATTATGTCACTGTCTCTCTGGTGGCGTTTTGATTTTTCGTCAAATTTTGATTAGGATTGAACATGTTAAGCTCATATCCAACTTAATATGTGATGTTCATCTTAAGTTGATAAAATTCTGGACCGGACCTGGTGGAGGGCGAGCAGGAGTCCGAGATCTAATAAATGCAGTTATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCGGGCTTGCCATCAGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATGCTGGTTCTCCTGGTCAGAGAGTATGCATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGGGAAAATACATTAAGATCCTTATGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTAGATCATATGGAGTTGAATGATATGGGTAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCTAATAGGATGCAAAGGTTGTTTGACCTTTCGGGTCCAAAAGAGGTTATGCTGGATGCTCTTATGATCATTTCTGATCTTTCTCGTATGGACAAGGGATTCTATGAATACATTAAAGGTGCTTCTGTTTTGGAGTTCTTAAAAAGTTTTCTTTCACATGAGGATCCGAATGTGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGCCGTCACAGTGCCTTTTTTTACAGTTCTCTTGCAAGATATCAAATCGTTAGTATCCTTATTGACCGATGCTCTGATCCAGACAAACGAACAAGGAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGATGTGTTGTATGAAGAGTTGAGGAGGTCGATTCCTCATCTGGCAAATTTGTTGGAAAAAGCAGAGGAGGATAAGACCAAGGCAAATGCAGCAGGCGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGAAGACATTGTGTCTAAAGGAGCGGTTCAGTCTCTCCTGAAGTTAATTTCCGATTATGCGGCATCAGCACTAAGCCCAAGCAGAAATGATTCAACAAACGAGTCTCCTTTAAAGATTGCTCTCTTTTCCCTTGCAAAGATGTGTGCCCATCCACTCTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTAATTGGAAGACTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGTATCAGTGATCATTAACAAAGTTGCCGAACCTTGA 3741 0.4095 MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMTPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETNNEIQDRELREISGSPKDSDTTQRVERKTIQTSTGSAEHISSPLQNEAQLNGPNMNKTNSKVLDESPGFSNQNDVAESGCQRLDKLESNSRTVKGAKVIGQDNEAFEFVLQPLKRWSKGSQNICSDQDLPASNQSLRILSNLVDAGVFSSNGQIDELISELLLFTRSVVAMKSAEVFDLLTKGFSITKILLDIGGKFCSTSYSNHWVELIEIYSQVVTSINDASGRVLYESSACITVMLSKVTQVQVLLQRTEIMDHRQDPLFDEESTKMVDVMTRAFLRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPSALCGLPSSLPITTVVSGGGDGTIVSEIFSVLSICSSSLNKDSVEPNNTKCKFANPSALIRHSCTILTIIAQSLKSTGRNSAIFMLTTSPKKQLARLSVLAHHVSYDDKTKASFQLQSASAMLALASILSLESVTSVESSISEIAMPLIPRSSTLSDHLKFSSGNENELDHGNFNGKLPYWLGVKDGCVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFLNASQENECLNDKVGLSPIGVVCTVSSLCHCLSGGVLIFRQILIRIEHVKLISNLICDVHLKLIKFWTGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNAGSPGQRVCMEDKDTVKAIEEDMGKYIKILMEVGVPSIILRCLDHMELNDMGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMQRLFDLSGPKEVMLDALMIISDLSRMDKGFYEYIKGASVLEFLKSFLSHEDPNVRAKACSALGNMCRHSAFFYSSLARYQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPHLANLLEKAEEDKTKANAAGALSNLVRNSDRLCEDIVSKGAVQSLLKLISDYAASALSPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYVSVIINKVAEP 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00398 1246 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00398 1246 MobiDBLite consensus disorder prediction 262 285 - -
Vifa3g00398 1246 FunFam Serine/threonine-protein kinase TIO 973 1242 - -
Vifa3g00398 1246 FunFam Aurora kinase A 2 89 - -
Vifa3g00398 1246 SUPERFAMILY ARM repeat 939 1243 IPR016024 -
Vifa3g00398 1246 Coils Coil 41 61 - -
Vifa3g00398 1246 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00398 1246 Gene3D - 972 1243 IPR011989 -
Vifa3g00398 1246 Gene3D Transferase(Phosphotransferase) domain 1 2 325 - -
Vifa3g00398 1246 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00398 1246 FunFam Serine/threonine-protein kinase 36 4 322 - -
Vifa3g00398 1246 SMART arm_5 1109 1149 IPR000225 GO:0005515
Vifa3g00398 1246 SMART arm_5 1150 1204 IPR000225 GO:0005515
Vifa3g00398 1246 SMART arm_5 1026 1066 IPR000225 GO:0005515
Vifa3g00398 1246 PANTHER PROTEIN KINASE RELATED 4 505 - -
Vifa3g00398 1246 MobiDBLite consensus disorder prediction 286 334 - -
Vifa3g00398 1246 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Vifa3g00398 1246 SUPERFAMILY Protein kinase-like (PK-like) 5 286 IPR011009 -
Vifa3g00398 1246 MobiDBLite consensus disorder prediction 262 334 - -
Vifa3g00398 1246 CDD STKc_STK36 5 257 - -
Vifa3g00398 1246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g00398 1246 Coils Coil 1114 1134 - -
Vifa3g00398 1246 Pfam HEAT repeats 1040 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00398 Vifa-Chr3 56672692 56695339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00398 4 246 AGC Kinase Gene Family AT3G08720 38.367 2.38e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vifa3g00398 Pkinase 5.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00398 K06228 - gmx:100792102 1697.56