Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00397 ATGGGTTCGGTGGAGAACTACCACGTGATCGAGCTCGTCGGAGAAGGTTCCTTCGGCAAAGTCTACAAAGGGAGACGCAAGCACACTGGACAGACTGTTGCCATGAAGTTCATAATGAAGCACGGTAAAACTGAAAAGGACATTCACAATTTGAGACAAGAAATTGAGATATTAAGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCTTTTGAAAGCCCACAAGAGTTTTGTGTTGTCACAGAATTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGACAAATGCCTTCCCGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAAAATATCCTCATTGGTTCTGGATCTATTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCGATGTCCACAAACACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAACTTGTCCGGGAACAACCTTACAACCACACAGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTTGTAGGCCAACCACCATTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGACCCGGTTAAATATCCCGATAGCATGACTCCAAACTTCAAAAGCTTTTTAAAGGGTTTACTTAACAAGGCACCGGAAAGTCGACTAACTTGGCCTGCTCTTCTTGAACACCCATTTGTTAAAGAAACTAACAACGAAATTCAGGACAGGGAACTGCGTGAGATAAGTGGTTCGCCAAAGGACAGTGATACAACACAGAGGGTTGAAAGAAAAACCATTCAAACTTCAACAGGAAAAAACAATCACAAAGCAGGTTCGGCGGAGCATATTTCTTCACCCCTTCAGAATGAAGCTCAGTTAAATGGTCCTAACATGAACAAAACCAATTCTAAGGTGCTTGATGAGTCTCCTGGCTTTTCGAATCAAAATGATGTAGCAGAGTCAGGTTGCCAAAGACTGGACAAACTTGAAAGTAACTCTCGCACTGTCAAAGGTGCAAAAGTAATTGGTCAAGACAATGAAGCATTTGAATTTGTTCTGCAACCCCTGAAAAGATGGTCGAAGGGATCTCAAAATATTTGCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCATTAAGAATTCTCTCAAATCTAGTTGATGCCGGTGTCTTCAGTTCTAATGGGCAAATAGACGAACTCATAAGTGAGCTTCTTTTGTTTACCAGATCTGTTGTAGCAATGAAGTCTGCTGAAGTTTTTGACCTGTTAACAAAGGGTTTCTCGATCACCAAAATTTTGCTTGATATTGGTGGGAAATTCTGTTCAACTTCATATTCAAATCACTGGGTTGAATTGATTGAAATCTATTCTCAGGTTGTAACTTCTATAAATGATGCATCTGGAAGAGTTCTGTATGAGTCTAGTGCCTGCATTACAGTCATGTTGTCTAAGGTTACTCAGGTTCAGGTCTTATTGCAGAGGACGGAAATTATGGATCACAGACAAGATCCCTTGTTTGATGAAGAATCAACAAAAATGGTTGATGTAATGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCAGTGTACTATTGTTTTCACCAACGGATTGAGTCTGCAACGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCATCCGCCCTTTGTGGTCTGCCCAGTTCCCTTCCTATAACTACTGTTGTAAGTGGTGGTGGTGATGGAACTATTGTTTCAGAGATTTTCTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATAGTGTAGAACCAAATAACACTAAATGTAAATTTGCAAATCCTTCTGCTCTGATTCGTCATTCATGTACCATTCTCACAATAATTGCACAAAGTTTGAAATCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCACCTCACCAAAGAAGCAGCTTGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCCATGTTGGCTCTGGCATCCATTCTTTCACTCGAATCTGTGACTTCGGTTGAGTCTTCGATATCTGAAATTGCTATGCCCTTAATTCCCCGAAGTTCTACACTAAGTGACCATCTTAAATTTTCATCAGGAAATGAAAATGAACTGGACCATGGAAATTTTAATGGGAAGCTCCCATATTGGCTAGGGGTAAAAGATGGGTGTGTTGGCCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTACTTCTTATCGGCTTATTAAGCAATGGGTTTTTAAATGCTTCTCAAGAAAACGAGTGCCTAAATGATAAAGTTGGATTGTCTCCTATCGGTGTTGTGTGCACAGTTTCATCATTATGTCACTGTCTCTCTGGTGGCGTTTTGATTTTTCGTCAAATTTTGATTAGGATTGAACATGTTAAGCTCATATCCAACTTAATATGTGATGTTCATCTTAAGTTGATAAAATTCTGGACCGGACCTGGTGGAGGGCGAGCAGGAGTCCGAGATCTAATAAATGCAGTTATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCGGGCTTGCCATCAGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATGCTGGTTCTCCTGGTCAGAGAGTATGCATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGGGAAAATACATTAAGATCCTTATGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTAGATCATATGGAGTTGAATGATATGGGTAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCTAATAGGATGCAAAGGTTGTTTGACCTTTCGGGTCCAAAAGAGGTTATGCTGGATGCTCTTATGATCATTTCTGATCTTTCTCGTATGGACAAGGGATTCTATGAATACATTAAAGGTGCTTCTGTTTTGGAGTTCTTAAAAAGTTTTCTTTCACATGAGGATCCGAATGTGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGCCGTCACAGTGCCTTTTTTTACAGTTCTCTTGCAAGATATCAAATCGTTAGTATCCTTATTGACCGATGCTCTGATCCAGACAAACGAACAAGGAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGATGTGTTGTATGAAGAGTTGAGGAGGTCGATTCCTCATCTGGCAAATTTGTTGGAAAAAGCAGAGGAGGATAAGACCAAGGCAAATGCAGCAGGCGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGAAGACATTGTGTCTAAAGGAGCGGTTCAGTCTCTCCTGAAGTTAATTTCCGATTATGCGGCATCAGCACTAAGCCCAAGCAGAAATGATTCAACAAACGAGTCTCCTTTAAAGATTGCTCTCTTTTCCCTTGCAAAGATGTGTGCCCATCCACTCTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTAATTGGAAGACTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGTATCAGTGATCATTAACAAAGTTGCCGAACCTTGA 3762 0.4091 MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMTPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETNNEIQDRELREISGSPKDSDTTQRVERKTIQTSTGKNNHKAGSAEHISSPLQNEAQLNGPNMNKTNSKVLDESPGFSNQNDVAESGCQRLDKLESNSRTVKGAKVIGQDNEAFEFVLQPLKRWSKGSQNICSDQDLPASNQSLRILSNLVDAGVFSSNGQIDELISELLLFTRSVVAMKSAEVFDLLTKGFSITKILLDIGGKFCSTSYSNHWVELIEIYSQVVTSINDASGRVLYESSACITVMLSKVTQVQVLLQRTEIMDHRQDPLFDEESTKMVDVMTRAFLRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPSALCGLPSSLPITTVVSGGGDGTIVSEIFSVLSICSSSLNKDSVEPNNTKCKFANPSALIRHSCTILTIIAQSLKSTGRNSAIFMLTTSPKKQLARLSVLAHHVSYDDKTKASFQLQSASAMLALASILSLESVTSVESSISEIAMPLIPRSSTLSDHLKFSSGNENELDHGNFNGKLPYWLGVKDGCVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFLNASQENECLNDKVGLSPIGVVCTVSSLCHCLSGGVLIFRQILIRIEHVKLISNLICDVHLKLIKFWTGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNAGSPGQRVCMEDKDTVKAIEEDMGKYIKILMEVGVPSIILRCLDHMELNDMGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMQRLFDLSGPKEVMLDALMIISDLSRMDKGFYEYIKGASVLEFLKSFLSHEDPNVRAKACSALGNMCRHSAFFYSSLARYQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPHLANLLEKAEEDKTKANAAGALSNLVRNSDRLCEDIVSKGAVQSLLKLISDYAASALSPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYVSVIINKVAEP 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00397 1253 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00397 1253 FunFam Aurora kinase A 2 89 - -
Vifa3g00397 1253 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00397 1253 Pfam HEAT repeats 1047 1151 - -
Vifa3g00397 1253 Coils Coil 1121 1141 - -
Vifa3g00397 1253 FunFam Serine/threonine-protein kinase 36 4 325 - -
Vifa3g00397 1253 MobiDBLite consensus disorder prediction 268 342 - -
Vifa3g00397 1253 SUPERFAMILY Protein kinase-like (PK-like) 5 283 IPR011009 -
Vifa3g00397 1253 Coils Coil 41 61 - -
Vifa3g00397 1253 SMART arm_5 1157 1211 IPR000225 GO:0005515
Vifa3g00397 1253 SMART arm_5 1116 1156 IPR000225 GO:0005515
Vifa3g00397 1253 SMART arm_5 1033 1073 IPR000225 GO:0005515
Vifa3g00397 1253 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00397 1253 SUPERFAMILY ARM repeat 946 1250 IPR016024 -
Vifa3g00397 1253 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Vifa3g00397 1253 PANTHER PROTEIN KINASE RELATED 4 512 - -
Vifa3g00397 1253 CDD STKc_STK36 5 257 - -
Vifa3g00397 1253 MobiDBLite consensus disorder prediction 268 285 - -
Vifa3g00397 1253 Gene3D Transferase(Phosphotransferase) domain 1 2 330 - -
Vifa3g00397 1253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g00397 1253 MobiDBLite consensus disorder prediction 286 342 - -
Vifa3g00397 1253 FunFam Serine/threonine-protein kinase TIO 980 1249 - -
Vifa3g00397 1253 Gene3D - 979 1250 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00397 Vifa-Chr3 56672692 56695339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00397 4 246 AGC Kinase Gene Family AT3G08720 38.367 2.64e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vifa3g00397 Pkinase 5.5e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00397 K06228 - gmx:100792102 1699.1