Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00389 ATGTACGGCGGTAGTAGGCGTGAAACCGAATCTGATACCCCCGTGATGCACAACGATGAAGATGAAGAAGACGAAGAAGGTTCCTTCAAGAGCTGGGCAAAACAAACACAAGAAAGTTATCAGTTACAGCTCGCACTCGCGCTTCGCATTTCATCTCACTCATCTTCTCCCTCTCAATCCAACTTCGCCTCTTCTCCTTCCGATTCCCCCCAATCTCTTTCCCACCGTTTTTGGGTTAACGGTTGTTTGCAATACTCTGACAAAATTCTAGACGGTTTTTACCTAATTCACGGGATGGATGCATATACATGGACTATAAGCACGGATATGCAGAATGTTGGTACAATTCCATCTATTGAATCACTCATGTCGGTTAAACCATGTGATAACTCTTCAATTGTAGTCATTTCTATTGATAAATCTAGAGACCCTGCCTTCAGAGAATTGCAAACTGGGGTACTAAGTCTCTCAACTAACTGGATTACGATCAAACATGCAACTCATCAGCTTGCAAATCTTGTTTATAATAGGATGGGAGGAGGATCTTCCGACGAAGATAATTTAGGTACACACTGGAAGGAATGCTCTGAACTTCTTAAAAGCTGTCTACAGTCTATCATTCTTCCTATTGGAAGCTTACCTGTCGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCAGATTTAATCAACCTACCGTGTCGAATTGCTAAGGGCTGCAAGTATTGTAGAAAGGACACAGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCCGGGGAAACATACCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGATTATACAAAGGCAATGGCCCAATTGTATTTCTTGGACAATCAAGCACTGCATCTTGCATTTGATACCACATCAGGAGGTGCTATTGATTGTAGTGGCAAAATGGATCTACAGCAAACTGAAATGTTAGGTGCAAACTATGCTGGGGGCAACCACCATATAGTTGCTTTGAGTCCCGGAGGTCCCGACATAGAGGAACATTTGTCTTTCAATGAATCAAACCAGTCAGGGGTAAATTATTCAAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAAGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCGGACTGGCGTGGCTCTGACGTTGCTGTGAAGATACTAAAGGTACAAGGTTTTGATTCTGAGCGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCTTGCGTCATCCAAACATCGTACTTCTAATGGGTGCTGTAATCCAACCCCCGAAGTTATCAATTGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAAGTGTTGGATCCTCAATCAGTGAGAAGCGTCGTTTAAGTATGGCATATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCAATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAAGCAAATACATATCTTTCTTCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACAATCAAATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAAATTCCAAGGCATGTGAATCCCCAAGCGGCTGCCTTGATTGAGCTCTGTTGGTCTGCGGATCCAAGGAGGCGGCCTTCTTTCTCCTACGTTATGAAATATTTGCTGCAAATAATTGCTGACGCGAAAGTGTGA 2001 0.4268 MYGGSRRETESDTPVMHNDEDEEDEEGSFKSWAKQTQESYQLQLALALRISSHSSSPSQSNFASSPSDSPQSLSHRFWVNGCLQYSDKILDGFYLIHGMDAYTWTISTDMQNVGTIPSIESLMSVKPCDNSSIVVISIDKSRDPAFRELQTGVLSLSTNWITIKHATHQLANLVYNRMGGGSSDEDNLGTHWKECSELLKSCLQSIILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDTGASCIVQFGSDREYMIDLVGRPGETYQPDSSVNSASSMLIPSPLCHPRFKPVETADYTKAMAQLYFLDNQALHLAFDTTSGGAIDCSGKMDLQQTEMLGANYAGGNHHIVALSPGGPDIEEHLSFNESNQSGVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPSVGSSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSKTAAGTPEWMAPEVIRGEQSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRHVNPQAAALIELCWSADPRRRPSFSYVMKYLLQIIADAKV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00389 666 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 76 657 - -
Vifa3g00389 666 SMART serkin_6 403 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00389 666 FunFam Serine/threonine-protein kinase isoform 1 393 481 - -
Vifa3g00389 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Vifa3g00389 666 SUPERFAMILY Protein kinase-like (PK-like) 384 657 IPR011009 -
Vifa3g00389 666 Gene3D Phosphorylase Kinase; domain 1 396 481 - -
Vifa3g00389 666 Pfam Protein tyrosine and serine/threonine kinase 404 656 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 FunFam Serine/threonine-protein kinase CTR1 482 666 - -
Vifa3g00389 666 Gene3D Transferase(Phosphotransferase) domain 1 482 665 - -
Vifa3g00389 666 MobiDBLite consensus disorder prediction 1 34 - -
Vifa3g00389 666 PRINTS Tyrosine kinase catalytic domain signature 628 650 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 PRINTS Tyrosine kinase catalytic domain signature 518 536 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 PRINTS Tyrosine kinase catalytic domain signature 477 490 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 PRINTS Tyrosine kinase catalytic domain signature 584 606 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 PRINTS Tyrosine kinase catalytic domain signature 565 575 IPR001245 GO:0004672|GO:0006468
Vifa3g00389 666 Pfam Ethylene-responsive protein kinase Le-CTR1 71 273 - -
Vifa3g00389 666 CDD STKc_MAP3K-like 409 657 - -
Vifa3g00389 666 ProSitePatterns Protein kinases ATP-binding region signature. 409 430 IPR017441 GO:0005524
Vifa3g00389 666 ProSiteProfiles Protein kinase domain profile. 403 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00389 Vifa-Chr3 55049281 55059049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00389 32 664 MAP Kinase Kinase Kinase AT5G03730 56.259 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa3g00389 PK_Tyr_Ser-Thr 5.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00389 K14510 - gmx:100807496 1083.55