Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00386 ATGGCGAAGGGTGACGATTCTATCCTAAAAAAGAAGAACAAAAAGTTTAGAAAAAGACTAAACAGCAAAAGTGATTCCACTTCTGTTTCTGCAAAGATTGCCGCTGTTATAGCCGCCAAGAAGCGCCGCAAGGCCGGAAAACGCCGCAACTGCGAGGGAATGTGCTATAGTTTACCTACTCTAGATGATCCATTCAATGATAGACGCGGGAAACCGGAATTCAAAACAAGGGATCCTGAAACGAAAACAACTCCCCGAAAAGAAAAGACAGATCGTGTGAAAGGGAAGAATGCACCTGGAGGGAAAGGCACAGTTGGTGGAAGTATTTCACAGAAATCAAATCAACAAACGGGAAGTGATGCCAACAATAAAAGTCTCACAGAGAAGGAAATTGTAAAGACGAATCAGCAGCATGATAATGAAATTTCAGACTTCCCTTCCAAATTTGTTTTCTGGTGTCTGAGTGCGATTGAAAACGCACTGCGACATGATGATGCCTACACTGAGGGAGAAGGCAACTCTTTCTTTCTTGACCCGTGGGGATTAGAATTTTCAAAGTGTTTTTCTACTGGTAAAGATTTGATGGACACCAGTGGGACCTTTGCTAGTACTGAGCAAATTGCATGGATGGTTTCTGCGGCAGCTGATGTTTTTGTTAGAAAAGAGAAACAAGGCTTATCATTAGAGTCCCCCTTTCTTTTGTTCCTCGTCCCTTCCGAAAAAAAAGCTGGCCAGGTTCGAACGGTTTGCAAGCCTTTGAAATCTCTAGGAGTACATACAGTTAGTCTTCATCCGGGTGCTTCCTTAGATCATCAGATTCAAGGTCTGAAAAGTTGTGAGCCCGAGTTTCTCATTGCTACTCCTGAGAGGCTCTTGGAGCTTGTTTCAATGAAGGCAATTGATATTTCTGATGTCTCCATGCTGGTTATTGACGGGCTTGATGCTATTTGTAATGCTGGCCATGCTGATGCAATAAAATCCATCAAGAAGCTTATTTCTGGCAATCCTACTCTTGTGGTTTTCAATGATAGCAACCATACATCTATCCCAGTAGTTAGGCATCTTCTGACCAGACCTATTTGTAGAATGTCTATTAATAATTCAATCGCCAGCCAAAGTTCATGCATTGTACAGTCTGTTCAAGTGTGTACATCAGATGAGGATACACATGTTAAGAGCATTGATGTCCTATGTCAATTTTGGAGCAGCCAAAATCATAATTCAAACCTTCTATATATTTTGAGGAAGGATGTTAAGTGCCTTAAATTGGTCAAGACTCTCAAATCCATGGGTTGTTCCACGTCAATTGAATCTGATGCAGCTACAATTAATGATAGTGTGGATCCAAAGAGAAGATTGGTTACAATGATTGATTTGGAGGATATCGCGACTTCGGATATAGGGATGTATGATGCAATAGTGCTACCAAATTTTGTACCCACTATGGTTACCTATGAGCATATTTTGACAAATATGGCCCGTCAAAGTGTCAACGGCATTTTGCATGGTTTCTTAACAAAAAGTGATACAGAACATGCTGGACCACTCATCTCAATTCTTGAACAATGTGGGCAGGAAGTTCCTGAAACCCTGAAAGATCTTCATCTGTCATCAAATATGTCCGAAGATTGA 1632 0.4118 MAKGDDSILKKKNKKFRKRLNSKSDSTSVSAKIAAVIAAKKRRKAGKRRNCEGMCYSLPTLDDPFNDRRGKPEFKTRDPETKTTPRKEKTDRVKGKNAPGGKGTVGGSISQKSNQQTGSDANNKSLTEKEIVKTNQQHDNEISDFPSKFVFWCLSAIENALRHDDAYTEGEGNSFFLDPWGLEFSKCFSTGKDLMDTSGTFASTEQIAWMVSAAADVFVRKEKQGLSLESPFLLFLVPSEKKAGQVRTVCKPLKSLGVHTVSLHPGASLDHQIQGLKSCEPEFLIATPERLLELVSMKAIDISDVSMLVIDGLDAICNAGHADAIKSIKKLISGNPTLVVFNDSNHTSIPVVRHLLTRPICRMSINNSIASQSSCIVQSVQVCTSDEDTHVKSIDVLCQFWSSQNHNSNLLYILRKDVKCLKLVKTLKSMGCSTSIESDAATINDSVDPKRRLVTMIDLEDIATSDIGMYDAIVLPNFVPTMVTYEHILTNMARQSVNGILHGFLTKSDTEHAGPLISILEQCGQEVPETLKDLHLSSNMSED 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00386 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 12 519 - -
Vifa3g00386 543 Gene3D - 222 369 IPR027417 -
Vifa3g00386 543 MobiDBLite consensus disorder prediction 1 125 - -
Vifa3g00386 543 MobiDBLite consensus disorder prediction 104 125 - -
Vifa3g00386 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 340 IPR027417 -
Vifa3g00386 543 MobiDBLite consensus disorder prediction 64 96 - -
Vifa3g00386 543 Pfam DEAD/DEAH box helicase 222 332 IPR011545 GO:0003676|GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00386 234 534 Eukaryotic Initiation Factors Gene Family AT1G72730 19.620 9.82e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00386 - - gmx:100809099 680.248