Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00376 ATGGTGATACCGATTGTGGAGCCTAACACTTGCATTAGGGGTTGCTGCACCAGTTCCTCTATTCCCCTCCATCTCCCTCCTTCCTCTTACTCTCTTCTCTCCCCTATCGCCCGAGGCGCTGAAAGTGTCGTTTATCAAGGCACTTTGAATGGACACAAGGTTGCTGTCAAGAAACCCGTTTTATCACTTTCTCAACACATCAATGACTTTCATAAACAATTGCAGTTGCTATGCAAGCTAGATCACCCGGGAATAGCAACACTAATCGCCGCCCATGCAAAACCACCCAATTATATGTTTTTCTTCCACCTATATGAATCCTCCAATCTAGCCCATAAGTTACATTTCGATGAATGGGTCCCCACCGTCAACAATGCTCTTATGATTACAATGCAGTTAGCAAAGGCCTTGCAATATCTGCATAACCTCGGAATTCTTCATAGAGATGTGAAACCAGCAAATATTCTTCTTGACATAAATCTTCGTCCACGCCTCACCGATTTTGGTTTGGCAGAATACAAGAGTGATATTAAAGGAGTTTCTCTTGAGAATTGGAAATCTTCTGGAAAACCTACAGGTGGTTTTCACAAAAAGAATATGGTTGGAACACTTGTTTACATGGCACCTGAAATATTAAGAAAGGAGTTACACACAGAGAAGTCAGATGTATACAGTTTTGGGATATCAATCAACGAACTCCTTACTGGTGTAGTGCCATATACTGATCTTCGTGCAGAAGCTCAGGCTCACACAGTACTTGAGATGAATTATACTGAACAACAACTAACAGCAGCAGTTGTTTCTGATGGATTACGACCGGTCCTTGCTAGCGAAGAGTTGGGTATACCGTCGAGATTAATATCAATGATACAGAAGTGCTGGAATGCTAATCCTAAAAGCAGACCTTCCTTTGATGATATTGTGAAGGAACTTGATTTTATTATGGAACACAGAAAGGTAAAGAAGGTGGAAGATATGCATATTCGGCCTTGTAACTTGAATGTTGACCATCCCGTAGACAAGACTTATCAAGAGAATATTAGCTGGTCTACTCAAGGTGAACTTTTAGTCAGAAATGCCTCTAGTGCAACTGATCCTTGTTTCAGAACGTGGGAGTCTTATGACGAACCTTTAGCATACCGTCCAATATTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGGCTATGGAGGACACACATTTCATTCTGCCCCATTTTTGCAATGAAAAGGATGTACATGCTTTTGGCATCTTTGATGGCCACAGAGGCGCAGCAGCAGCTGAGTTTTCTTCTAGGGCTGTACCAGCAATTTTGCAAACTTTAGGTTTTACAGACAGTCCTGCTAATACACTAGTGGAAGCCTTCGTTAGAACTGATACTGCGTTCAGAAAAGAGCTTGATTCCTATCGCAAATCCAACAGGTGTATCCAGAAGGATATGCATCCTGGTTGTACAGCAATTGCTGCTATTGTAAGCGGCAACAAGCTTTTCGTTGCTAATAGTGGTGATTGCCGGGCAATCTTATGTCGTGCTGGTAATCCCACTGCTCTAAGTAAGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATTCGTCACGGGGGACAAGTACATTGGCAAGTTGATACCTGGAGAGTTGGTCCTCCTGCACTTCAGGTTACTCGTTCTATCGGTGATGATGATTTGAAGCCTGCTGTAACTGCAGAACCTGAGTTAACTGAGCACACCTTATGTGCCGAGGATGAATTTCTGGTGATGGCGAGCGATGGTCTGTGGGATGTGGTGAGCAGTTTGGATGTGATAAATATAATAAAAGACACAGTTAAAGAGGCTGGCATGTGCTCTAAGAGGTTGGCTACTGAAGCTGTGGAACGTGGTAGCAAAGATAACATTACAGTTATTGTTGTTTTTCTACGACCTGTATCTACAGCAGAGAGAATTTATTAG 1959 0.4288 MVIPIVEPNTCIRGCCTSSSIPLHLPPSSYSLLSPIARGAESVVYQGTLNGHKVAVKKPVLSLSQHINDFHKQLQLLCKLDHPGIATLIAAHAKPPNYMFFFHLYESSNLAHKLHFDEWVPTVNNALMITMQLAKALQYLHNLGILHRDVKPANILLDINLRPRLTDFGLAEYKSDIKGVSLENWKSSGKPTGGFHKKNMVGTLVYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDGLRPVLASEELGIPSRLISMIQKCWNANPKSRPSFDDIVKELDFIMEHRKVKKVEDMHIRPCNLNVDHPVDKTYQENISWSTQGELLVRNASSATDPCFRTWESYDEPLAYRPILSWGSYATCGRREAMEDTHFILPHFCNEKDVHAFGIFDGHRGAAAAEFSSRAVPAILQTLGFTDSPANTLVEAFVRTDTAFRKELDSYRKSNRCIQKDMHPGCTAIAAIVSGNKLFVANSGDCRAILCRAGNPTALSKDHVASCLQERERVIRHGGQVHWQVDTWRVGPPALQVTRSIGDDDLKPAVTAEPELTEHTLCAEDEFLVMASDGLWDVVSSLDVINIIKDTVKEAGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00376 652 Pfam Protein phosphatase 2C 390 635 IPR001932 -
Vifa3g00376 652 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00376 652 SUPERFAMILY Protein kinase-like (PK-like) 17 321 IPR011009 -
Vifa3g00376 652 FunFam Protein kinase and PP2C-like domain-containing protein 20 345 - -
Vifa3g00376 652 SMART PP2C_SIG_2 400 642 IPR001932 -
Vifa3g00376 652 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 312 - -
Vifa3g00376 652 SUPERFAMILY PP2C-like 378 644 IPR036457 -
Vifa3g00376 652 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 376 646 - -
Vifa3g00376 652 Gene3D Transferase(Phosphotransferase) domain 1 19 338 - -
Vifa3g00376 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vifa3g00376 652 SMART PP2C_4 375 640 IPR001932 -
Vifa3g00376 652 Pfam Protein kinase domain 31 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00376 652 CDD PP2Cc 387 642 IPR001932 -
Vifa3g00376 652 Gene3D - 378 647 IPR036457 -
Vifa3g00376 652 ProSiteProfiles PPM-type phosphatase domain profile. 385 642 IPR001932 -
Vifa3g00376 652 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00376 Vifa-Chr3 50698119 50701860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00376 99 652 PP2C-type Phosphatase Gene Family AT2G40860 64.121 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Vifa3g00376 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00376 - - vun:114166829 1078.54