Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00372 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCCCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAGATTAAAGCGAAAGAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGGGCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGCAAATGTGACAGCAGCTTTGCAGCAAATGCAGGTTCGAACTCAGCAAATCCCTCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGATCATTCTTCCATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGGGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAGCAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCCAATCAGTTTCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGTACACGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCCAGGGGAGGTTTGAATGTTAAAGACAGTCAGCCAATTGCAAACGATGGGTCAATAGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACTTCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCGAACTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTCACTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACATACTGTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACTTCTTCGTTTGATACAACCGTGCGACTTTGGGATGCTGCAGATCCAAGCTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTCGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCTTCTGGAATATTAATCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTCGAGACTGACAGGAAAATGCACTCATTTCAGGGACACTCTGCGGATGTACATTGTATATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCTGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAGTGTATGACCATACCAGCTCACGAGGGTGTAATATCAGCTCTAGCACAATCACCGGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2352 0.4371 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGGLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSANVTAALQQMQVRTQQIPQDIKSEVNMGNMQRSLPMDHSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVTMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHSSHVASLDFHPKKNDLFCSCDDNSEIRFWNINQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSFQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Vifa3g00372 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Vifa3g00372 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Vifa3g00372 783 Pfam WD domain, G-beta repeat 750 783 IPR001680 GO:0005515
Vifa3g00372 783 Pfam WD domain, G-beta repeat 539 576 IPR001680 GO:0005515
Vifa3g00372 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Vifa3g00372 783 Pfam WD domain, G-beta repeat 584 620 IPR001680 GO:0005515
Vifa3g00372 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Vifa3g00372 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Vifa3g00372 783 MobiDBLite consensus disorder prediction 326 415 - -
Vifa3g00372 783 CDD WD40 498 783 - -
Vifa3g00372 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Vifa3g00372 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Vifa3g00372 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Vifa3g00372 783 MobiDBLite consensus disorder prediction 320 415 - -
Vifa3g00372 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Vifa3g00372 783 Coils Coil 79 99 - -
Vifa3g00372 783 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Vifa3g00372 783 SUPERFAMILY WD40 repeat-like 496 783 IPR036322 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Vifa3g00372 783 Gene3D - 477 635 IPR015943 GO:0005515
Vifa3g00372 783 Gene3D - 636 783 IPR015943 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Vifa3g00372 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa3g00372 783 SMART Lish 8 40 IPR006594 GO:0005515
Vifa3g00372 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00372 Vifa-Chr3 49173513 49189635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00372 520 701 U-box Gene Family AT2G33340 28.042 7.96e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa3g00372 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00372 - - var:108326218 1357.43