Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00370 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCTAATACTGAAAATGCAGCAATTGATGCCCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAGATTAAAGCGAAAGAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGGGCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGCAAATGTGACAGCAGCTTTGCAGCAAATGCAGGTTCGAACTCAGCAAATCCCTGATATCAAAAGCGAAGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGATCATTCTTCCATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGGGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAGCAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCCAATCAGTTTCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGTACACGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCCAGGGGAGGTTTGAATGTTAAAGACAGTCAGCCAATTGCAAACGATGGGTCAATAGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACTTCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCGAACTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTCACTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACATACTGTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACTTCTTCGTTTGATACAACCGTGCGACTTTGGGATGCTGCAGATCCAAGCTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTCGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCTTCTGGAATATTAATCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTCGAGACTGACAGGAAAATGCACTCATTTCAGGGACACTCTGCGGATGTACATTGTATATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCTGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAGTGTATGACCATACCAGCTCACGAGGGTGTAATATCAGCTCTAGCACAATCACCGGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2367 0.436 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVANTENAAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGGLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSANVTAALQQMQVRTQQIPDIKSEVNMGNMQRSLPMDHSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVTMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHSSHVASLDFHPKKNDLFCSCDDNSEIRFWNINQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSFQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00370 788 Coils Coil 85 105 - -
Vifa3g00370 788 PRINTS G protein beta WD-40 repeat signature 775 788 IPR020472 -
Vifa3g00370 788 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Vifa3g00370 788 PRINTS G protein beta WD-40 repeat signature 568 582 IPR020472 -
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 548 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 500 539 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 628 664 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 708 747 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 585 625 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 542 581 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 667 705 IPR001680 GO:0005515
Vifa3g00370 788 SMART WD40_4 749 788 IPR001680 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Vifa3g00370 788 SUPERFAMILY WD40 repeat-like 501 788 IPR036322 GO:0005515
Vifa3g00370 788 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 788 IPR001680 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Vifa3g00370 788 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 788 IPR044716 GO:0003714
Vifa3g00370 788 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 542 - -
Vifa3g00370 788 Pfam WD domain, G-beta repeat 755 788 IPR001680 GO:0005515
Vifa3g00370 788 Pfam WD domain, G-beta repeat 544 581 IPR001680 GO:0005515
Vifa3g00370 788 Pfam WD domain, G-beta repeat 589 625 IPR001680 GO:0005515
Vifa3g00370 788 Pfam WD domain, G-beta repeat 670 705 IPR001680 GO:0005515
Vifa3g00370 788 Pfam WD domain, G-beta repeat 512 539 IPR001680 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 788 - -
Vifa3g00370 788 MobiDBLite consensus disorder prediction 331 420 - -
Vifa3g00370 788 CDD WD40 503 788 - -
Vifa3g00370 788 Gene3D - 641 788 IPR015943 GO:0005515
Vifa3g00370 788 MobiDBLite consensus disorder prediction 325 420 - -
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 592 627 - -
Vifa3g00370 788 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats profile. 674 714 IPR001680 GO:0005515
Vifa3g00370 788 SMART Lish 8 40 IPR006594 GO:0005515
Vifa3g00370 788 Gene3D - 482 640 IPR015943 GO:0005515
Vifa3g00370 788 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00370 Vifa-Chr3 49173513 49189635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00370 525 706 U-box Gene Family AT2G33340 28.042 9.02e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa3g00370 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00370 - - var:108326218 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00370 3 49173513 49189635 Vifa3g00370 3 49173513 49189635 ECH