Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00369 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCCCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAGATTAAAGCGAAAGAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGGGCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGCAAATGTGACAGCAGCTTTGCAGCAAATGCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGATCATTCTTCCATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGGGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAGCAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCCAATCAGTTTCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGTACACGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCCAGGGGAGGTTTGAATGTTAAAGACAGTCAGCCAATTGCAAACGATGGGTCAATAGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACTTCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCGAACTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTCACTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACATACTGTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACTTCTTCGTTTGATACAACCGTGCGACTTTGGGATGCTGCAGATCCAAGCTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTCGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCTTCTGGAATATTAATCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTCGAGACTGACAGGAAAATGCACTCATTTCAGGGACACTCTGCGGATGTACATTGTATATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCTGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAGTGTATGACCATACCAGCTCACGAGGGTGTAATATCAGCTCTAGCACAATCACCGGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2328 0.4364 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGGLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSANVTAALQQMQDIKSEVNMGNMQRSLPMDHSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVTMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHSSHVASLDFHPKKNDLFCSCDDNSEIRFWNINQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSFQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 494 535 IPR001680 GO:0005515
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 568 IPR001680 GO:0005515
Vifa3g00369 775 Pfam WD domain, G-beta repeat 499 526 IPR001680 GO:0005515
Vifa3g00369 775 Pfam WD domain, G-beta repeat 531 568 IPR001680 GO:0005515
Vifa3g00369 775 Pfam WD domain, G-beta repeat 576 612 IPR001680 GO:0005515
Vifa3g00369 775 Pfam WD domain, G-beta repeat 742 775 IPR001680 GO:0005515
Vifa3g00369 775 Pfam WD domain, G-beta repeat 657 692 IPR001680 GO:0005515
Vifa3g00369 775 ProSitePatterns Trp-Asp (WD) repeats signature. 513 527 IPR019775 -
Vifa3g00369 775 Gene3D - 469 627 IPR015943 GO:0005515
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 701 IPR001680 GO:0005515
Vifa3g00369 775 SUPERFAMILY WD40 repeat-like 488 775 IPR036322 GO:0005515
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 568 - -
Vifa3g00369 775 MobiDBLite consensus disorder prediction 318 407 - -
Vifa3g00369 775 CDD WD40 490 775 - -
Vifa3g00369 775 MobiDBLite consensus disorder prediction 312 407 - -
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 614 - -
Vifa3g00369 775 Coils Coil 79 99 - -
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 743 775 - -
Vifa3g00369 775 SMART WD40_4 736 775 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 529 568 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 695 734 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 487 526 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 572 612 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 615 651 IPR001680 GO:0005515
Vifa3g00369 775 SMART WD40_4 654 692 IPR001680 GO:0005515
Vifa3g00369 775 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 775 IPR001680 GO:0005515
Vifa3g00369 775 Gene3D - 628 775 IPR015943 GO:0005515
Vifa3g00369 775 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 775 IPR044716 GO:0003714
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
Vifa3g00369 775 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa3g00369 775 SMART Lish 8 40 IPR006594 GO:0005515
Vifa3g00369 775 PRINTS G protein beta WD-40 repeat signature 762 775 IPR020472 -
Vifa3g00369 775 PRINTS G protein beta WD-40 repeat signature 513 527 IPR020472 -
Vifa3g00369 775 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Vifa3g00369 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 494 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00369 Vifa-Chr3 49173513 49189635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00369 512 693 U-box Gene Family AT2G33340 28.042 8.40e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa3g00369 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00369 - - var:108326218 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00369 3 49173513 49189635 Vifa2g04064 2 1191365622 1191373140 PCT