Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00364 ATGTTAGCAATCTCACCTCATTTGTTTTCATCAATAGGATCATGGCCCTTTGAAGACCACATAAGCCAAAACCATCATCAAAATCAACTCTTCAAAGACACTACTCATCAATCATTTCACTTTCATCATCAACTTGAACCCAAAACTAATTCAACTGATCCATCACAGGCTACAAGTAGCGACCTTAGCATGGTGAAGAAGCTTGTTCATAATGCTAGTGAACGCCATCGCCGCAAAAAGATAAATAATTTGTATTCCTCACTTCGTTCACTTCTTCCTTTGTCAGATCAAATGAAGAAGTTGAGCATTCCATTAACAATATCAAGAGTCTTGAAATATATACCAGAGTTACAGGAACATGTGGAAGGACTGATCAAGAGAAAGGAAGAGATCTTATTCAAACTTTCACCGATAAGCAAAGAAACTCAAATGAAGAAGCATAGTTACTATTCTGGTTTTGTGGTTTCAAGTTGTAGGCTCAATGATAGTGAAGTTAGTATTCAGATTTCATGTTACACCAATGTCCACATGGTGCCACTATCTGAGACCTTGCTCTATTTAGAAAATGATGGATTTCTGCTTCTAAATGTTTCTTCCTCTCAGACATTTGAAGGGAGAGTCTTCTATAATTTGCATTATCAGGTGGATAAAACAAGGAGATTAGAATCAGATATTCTAAATGAGAAGATCTTATCAATAATGGAGAAGTAG 711 0.3615 MLAISPHLFSSIGSWPFEDHISQNHHQNQLFKDTTHQSFHFHHQLEPKTNSTDPSQATSSDLSMVKKLVHNASERHRRKKINNLYSSLRSLLPLSDQMKKLSIPLTISRVLKYIPELQEHVEGLIKRKEEILFKLSPISKETQMKKHSYYSGFVVSSCRLNDSEVSIQISCYTNVHMVPLSETLLYLENDGFLLLNVSSSQTFEGRVFYNLHYQVDKTRRLESDILNEKILSIMEK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00364 236 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Vifa3g00364 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
Vifa3g00364 236 Gene3D - 57 148 IPR036638 GO:0046983
Vifa3g00364 236 SMART finulus 71 123 IPR011598 GO:0046983
Vifa3g00364 236 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 56 229 - -
Vifa3g00364 236 FunFam Transcription factor ORG2 61 146 - -
Vifa3g00364 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 136 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00364 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.036 1.42e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g00364 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00364 - - vvi:100262373 220.32