Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00363 ATGGATGATCCAACTAGCAAGAATGAGAATGGAGAAAGGTGTGTGATGTTGTTTGGCGTGAACATCGCAGCAAAACGTTCTAGAGTTGAGGACATGATGATGATCGAAAGTTTTAACACTGAGGATGAAAATCAGAATGGGATGGAGCTTTGTTCTTTTGACAAACAGGAGGATGAGAGTGATGATGAGAGGAATGAAACTCATTATTCTTGTCAAAGTCTCAGCCTCGAAAACCGAAAAAAAGTGAAACAATGGACAAAGAATGAACACAAGGAGTTTTTGGTAGGTTTACAAACGGTTGGGAAAGGTAAATGGAAGGATATAGCTAGGCATTATGTGAAGACCAAGACTTCTACTCAAGTTGCTAGTCATGCACAGAAGTATTTTCTCAGGAAAAGAACATTTGAAAAAACAAAGCGCCATAGCGTCTTCGATATGATGCTTGTATGGATGATGAAGATTCAGAAACTCCGAGTCCTTCTCCGTCGCGGAAACCATCCCCTAGCCACTCTATATAGAGAACAGTGGTCTAAGCCTCAGCATCACTTGTTAACTAAGAGAGATGAAGTCAATATAACCATTCCTCCATCTCAATATATAGTATCTGGTTTGTTGAAAAGTTACAAAAATGAATTGATTCCAGCTGTTAAAGTTCACTTAATAGCTGCAAATATATTCACCCTAGAAAACCAATGA 696 0.3879 MDDPTSKNENGERCVMLFGVNIAAKRSRVEDMMMIESFNTEDENQNGMELCSFDKQEDESDDERNETHYSCQSLSLENRKKVKQWTKNEHKEFLVGLQTVGKGKWKDIARHYVKTKTSTQVASHAQKYFLRKRTFEKTKRHSVFDMMLVWMMKIQKLRVLLRRGNHPLATLYREQWSKPQHHLLTKRDEVNITIPPSQYIVSGLLKSYKNELIPAVKVHLIAANIFTLENQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00363 231 CDD SANT 85 129 IPR001005 -
Vifa3g00363 231 Gene3D - 83 135 - -
Vifa3g00363 231 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Vifa3g00363 231 SUPERFAMILY Homeodomain-like 79 133 IPR009057 -
Vifa3g00363 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Vifa3g00363 231 PANTHER TRANSCRIPTION FACTOR KUA1 9 149 - -
Vifa3g00363 231 SMART sant 81 131 IPR001005 -
Vifa3g00363 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Vifa3g00363 231 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00363 Vifa-Chr3 46879977 46881403 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g00363 Myb_DNA-binding 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00363 - - psat:127131362 210.305