Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00362 ATGGAACAAACCTTTGCCTCGTCCACCTTCAGTTTTTGGTCCTCAAACATCCTAGATACTCAAAATTGCAATAACATGGCACAAACATCTTTCTCTAAACCTCCAAGATCATCCTCCAATCTAAGCAACCGTAAACCCTCTTTGATGAACATCAAAATTCCTTCTATTACCAAACCTCTCCCACAACCAAACATTGTCAAAAGTGACAGCAAAGAAGACAATAAGCACTATAGAGGTGTTAGAAGAAGACCATGGGGGAAATTTGCTGCTGAAATCCGAGACCCTAATAGAAAAGGGTCAAGAGTGTGGCTTGGTACCTTTGATACTGCCATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTTAGGATGAGAGGAAGTAAGGCGATATTGAATTTTCCTCTAGATGTTGCCACTGATGAATCTGCAGAAGAATCATCACTTTTTTCTAGCTCAAACTACATCAAAGTTGGTGAGAAAAGAGAAAGAGATGAAGGAGATTACGTTGAAATTGAGATGAAAAGTAGTAATAATAACAAGCATGTGAAGAAAGAAGAAGGGGTTTCGGTTTCAGTTTCAGTTTCAGGTGCAGGAACAGTTTGTCCTTTGACTCCTTCATGTTGGAAAGGGTTTTGGGATACTGATGTTACTGGAACTATCTTTAGTGTACCTCCTTTGTCACCCTTATCTCCAATTATGGGATGTTGA 708 0.3941 MEQTFASSTFSFWSSNILDTQNCNNMAQTSFSKPPRSSSNLSNRKPSLMNIKIPSITKPLPQPNIVKSDSKEDNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFRMRGSKAILNFPLDVATDESAEESSLFSSSNYIKVGEKRERDEGDYVEIEMKSSNNNKHVKKEEGVSVSVSVSGAGTVCPLTPSCWKGFWDTDVTGTIFSVPPLSPLSPIMGC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00362 235 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 MobiDBLite consensus disorder prediction 25 46 - -
Vifa3g00362 235 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 MobiDBLite consensus disorder prediction 59 78 - -
Vifa3g00362 235 Gene3D AP2/ERF domain 75 136 IPR036955 GO:0003700|GO:0006355
Vifa3g00362 235 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 PANTHER DNA-BINDING DOMAIN 44 175 IPR044808 GO:0003700|GO:0009873
Vifa3g00362 235 CDD AP2 75 134 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Vifa3g00362 235 SUPERFAMILY DNA-binding domain 76 136 IPR016177 GO:0003677
Vifa3g00362 235 FunFam Ethylene-responsive transcription factor 2 75 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00362 Vifa-Chr3 46510570 46511277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00362 37 234 AP2-EREBP Transcription Factor Family AT5G51190 49.510 6.52e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g00362 AP2 6.8e-16 CL0081