Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00360 ATGACAAGAGCAAAAGAAACTTCAAACATAGATCTCATACGCCACCATCTCTTAGACAACACCACCTTCTTCACTTTCCTTGAAGACTATGACTTGATATCAGACATGGAGTTCTTCACTCACACTTCATCTCCAAATGAAACAACAAGCCCTTCAAAGGAAACCAAGAAATCTAATTCATCACCTGAAATACTACCACTACCACTACCACTACCAATACCAAGTACTATTGTGTCATCAAAGAAGATGAAGAAAGAAGAAGAGTGTGTTGATGAGACAAGGAAGTATAGAGGAGTAAGGAGAAGGCCATGGGGGAAATTTGCAGCTGAGATACGTGATCCGTCAAGGAAAGGAAGTAGGGTTTGGTTAGGTACATTTGATTCTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGGGGTCGAAAAGCTATATTGAACTTTCCTTTGGAGGCTGGATTGTGTGATCCTAAGCCAAATAGTTGTGGCAGGAAAAGGAGAAGAGAAACTAAAAGTGAAGCTTCAACAAGTCCTAGTTCAAGTTCATGA 561 0.4011 MTRAKETSNIDLIRHHLLDNTTFFTFLEDYDLISDMEFFTHTSSPNETTSPSKETKKSNSSPEILPLPLPLPIPSTIVSSKKMKKEEECVDETRKYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDSEIDAAKAYDSAAFRMRGRKAILNFPLEAGLCDPKPNSCGRKRRRETKSEASTSPSSSS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00360 186 MobiDBLite consensus disorder prediction 41 62 - -
Vifa3g00360 186 MobiDBLite consensus disorder prediction 41 71 - -
Vifa3g00360 186 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700|GO:0006355
Vifa3g00360 186 MobiDBLite consensus disorder prediction 160 186 - -
Vifa3g00360 186 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Vifa3g00360 186 PANTHER DNA-BINDING DOMAIN 54 173 IPR044808 GO:0003700|GO:0009873
Vifa3g00360 186 SUPERFAMILY DNA-binding domain 95 155 IPR016177 GO:0003677
Vifa3g00360 186 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vifa3g00360 186 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Vifa3g00360 186 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vifa3g00360 186 FunFam Ethylene-responsive transcription factor 2 94 155 - -
Vifa3g00360 186 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
Vifa3g00360 186 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00360 Vifa-Chr3 46369753 46370397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00360 1 172 AP2-EREBP Transcription Factor Family AT5G07580 43.386 2.72e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g00360 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00360 - - gmx:100305726 206.453