Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00349 ATGGGGAACTCTTGTGTTGGTCCTAGCATTTCAAAGAATGGTATTATTCAATCGTTTTCGGCTGCGATTTGGCGTACTCACTTACCTGAACCTGAAGGATCAGTGGCGAATAGAGGTTCTGTAAATGATGTAGCAACTGATAATGAACCCGATTCTCCGTTGCCTGTACAAAACAAACCTCCTGAGCAGATAACTATACCGAAGACCGAATCCGAAAAGGAACCTGAAAAGGAAAAGAAGAAACAAAGGAAACCTTCTGTGAAGAGAAGTTCTAGTGCTGGACTTCGTGTTGATTCCGTGTTGCAGAGAGAAACTGGTAATTTCAAGGACTTTTTTAGTCTAGGGAAAAAACTCGGACAAGGTCAGTTTGGGGTGACATTCTTGTGTATTGAGAAAGAAACCGGGCGGCAGTATGCTTGTAAATCTATTGCCAAGAGGAAGCTTGTGACCGATGATGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCATTTGGCTGGACATCGTAATGTTATATCCATCAAAGGTGCTTATGAGGATGCAGTGGCTGTTCATGTTGTGATGGAATTGTGTGCAGGTGGTGAGCTTTTTGATCGGATTATTCAGCGTGGACATTATACCGAAAGAAAGGCTGCTGAACTTATCAGGACTATTGTTGGGGTTGTTGAAGCTTGTCATTCTCTTGGTGTCATGCATAGAGACCTTAAGCCTGAGAATTTTCTATTCGTCAATCACCAAGAAGATTCGCTACTCAAAACTATTGACTTTGGATTGTCCGTGTTCTTTAAGCCAGGTGATACATTTATCGATGTGGTTGGTAGTCCATATTATGTTGCCCCAGAAGTTTTGAAAAAACGTTACGGTCCTGAAGCAGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGCATATTCGAACAGGTTTTGCACGGTGATCTTGACTTCGCTTCAGATCCATGGCCTGCAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGTGACCCTAGAAGACGGATGACTGCGTATCAAGTATTATGTCATCCTTGGGTTCAAGTTGATGGTGTAGCTCCTGACAAACCACTTGATTCCGCCGTATTAAGTCGCTTGAAGCAATTTTCTGCTATGAACAAGCTTAAGAAAATGGCTCTTATAGTCATTGCAGAGAGCTTATCAGAAGAAGAATTAGCTGGCTTAAAAGAAATGTTCAAGATGTTAGACACAGATAACAGCGGTCAAATTACTTTTGAAGAACTTAAAGTCGGTTTGAAAAAAGTTGGTGCAAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGATATAGATAACAGTGGAACGATTGATTACGGTGAGTTCATTGCGGCAACATTGCATCTTAACAAAGTTGAAAGAGAAGATCATCTATTTGCAGCTTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAAGCGTGTGACGAGTTTGGCATAAAAGATGTTGGGTTGGACGAGATAATCAAGGAAATTGATGAAGATAATGACGGGCGCATAGATTATAACGAGTTTGTGGCTATGATGCAGAAAGGAAATGTTCCCATGGTTGGTAAGAAAGGCCTTGAAAATAACTTCAGCATTCGTTTCAAGGAAGCATTAAAATTGTAG 1728 0.4034 MGNSCVGPSISKNGIIQSFSAAIWRTHLPEPEGSVANRGSVNDVATDNEPDSPLPVQNKPPEQITIPKTESEKEPEKEKKKQRKPSVKRSSSAGLRVDSVLQRETGNFKDFFSLGKKLGQGQFGVTFLCIEKETGRQYACKSIAKRKLVTDDDVEDVRREIQIMHHLAGHRNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELIRTIVGVVEACHSLGVMHRDLKPENFLFVNHQEDSLLKTIDFGLSVFFKPGDTFIDVVGSPYYVAPEVLKKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLHGDLDFASDPWPAISESAKDLVRKMLVRDPRRRMTAYQVLCHPWVQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEELAGLKEMFKMLDTDNSGQITFEELKVGLKKVGANLKESEIYDLMQAADIDNSGTIDYGEFIAATLHLNKVEREDHLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVGLDEIIKEIDEDNDGRIDYNEFVAMMQKGNVPMVGKKGLENNFSIRFKEALKL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00349 575 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Vifa3g00349 575 CDD EFh 489 549 IPR002048 GO:0005509
Vifa3g00349 575 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Vifa3g00349 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 102 544 - -
Vifa3g00349 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vifa3g00349 575 FunFam Calcium-dependent protein kinase SK5 198 382 - -
Vifa3g00349 575 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Vifa3g00349 575 MobiDBLite consensus disorder prediction 30 95 - -
Vifa3g00349 575 CDD STKc_CAMK 111 369 - -
Vifa3g00349 575 ProSiteProfiles Protein kinase domain profile. 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00349 575 FunFam Calcium-dependent protein kinase 1 378 552 - -
Vifa3g00349 575 ProSitePatterns Protein kinases ATP-binding region signature. 118 145 IPR017441 GO:0005524
Vifa3g00349 575 Pfam Protein kinase domain 113 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00349 575 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vifa3g00349 575 FunFam Calcium-dependent protein kinase 1 114 197 - -
Vifa3g00349 575 MobiDBLite consensus disorder prediction 39 65 - -
Vifa3g00349 575 ProSitePatterns EF-hand calcium-binding domain. 532 544 IPR018247 -
Vifa3g00349 575 MobiDBLite consensus disorder prediction 66 81 - -
Vifa3g00349 575 CDD EFh 418 477 IPR002048 GO:0005509
Vifa3g00349 575 Gene3D - 395 554 - -
Vifa3g00349 575 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Vifa3g00349 575 Gene3D Phosphorylase Kinase; domain 1 114 197 - -
Vifa3g00349 575 SUPERFAMILY EF-hand 410 550 IPR011992 -
Vifa3g00349 575 SMART serkin_6 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00349 575 Gene3D Transferase(Phosphotransferase) domain 1 198 394 - -
Vifa3g00349 575 ProSiteProfiles EF-hand calcium-binding domain profile. 524 554 IPR002048 GO:0005509
Vifa3g00349 575 SUPERFAMILY Protein kinase-like (PK-like) 110 371 IPR011009 -
Vifa3g00349 575 SMART efh_1 523 551 IPR002048 GO:0005509
Vifa3g00349 575 SMART efh_1 453 481 IPR002048 GO:0005509
Vifa3g00349 575 SMART efh_1 417 445 IPR002048 GO:0005509
Vifa3g00349 575 SMART efh_1 489 517 IPR002048 GO:0005509
Vifa3g00349 575 Pfam EF-hand domain pair 488 549 IPR002048 GO:0005509
Vifa3g00349 575 Pfam EF-hand domain pair 418 478 IPR002048 GO:0005509
Vifa3g00349 575 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00349 Vifa-Chr3 44892882 44895520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00349 1 570 EF-hand Containing Proteins AT5G04870 73.127 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g00349 Pkinase 3.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00349 K13412 - gmx:100797449 962.985