LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g00342	ATGTTCATATTTTTATCACTCTTTATCTTGCTAATCGAAACTCTAACAGCTACAACAAGCACTGTAAATAGTCCAACTACATTCTCCTTTATTTCTTTTAGTCCTGAAAGTTGCAACAATGGTGAATTGCTTTGTATGGGTTCAGCCACTTCAGGAAATGGTTATATAAGTCTCACACCAGAGCCAGAGAGAGAACAAAGCAACAGCTCAGATTCTATGTTTGGGACATCTGACATAGCTAACAAAGTAGGAAAGGTTTTGTACCCTCATCCAGTTCATGTTTGGCCGGCAATTATCACTACTACATTCACTATTAGGATCACGCCGTTCTTGAAAAACTCGACCAGCTCGGGTGATGGAATTGCACTAGTATTTGCACAAGATAATAGGCCTTCTCCAAATGATAGCTATGGTTCCTATCTTGGTATGTTTGATAGGTCTACACAAGATGAGAGTTTTCGACAGATAGGTGTGGAGTTGGACACATTCATGAATGAATTTGATCCAGATGGAAACCATATTGGTATAGTCACAACAAGCATCACAAATCCAATTGCTTTTAGTAGTATCAATAGCACTAATGTTGATCTCAAAAGTGGAAGAAACATTATGGTTAAAGTTGATTATAATGGCTGGACTAAAATGATTTCTGTCTCGACCGGATACTCAAATAGTCAATTAAAGAGTGTTCTTAACCATTCAATTAACTTACCTGATATAATTCCGAGCTCCGTTTATGTTGGTTTTACGGCCTCAACTGGAAAGACTTTTCCTGAAACTCATCAAATCCTAAATTGGTTTTTCACATCAGTGCCATTGCCTGTTCTTTCTGTTAAACACAGTGCTATTGGAAAACTCAAGTTCTTGTTCATAATTGTTTTACCATTTCTTGTGTTAGTTAGTTTACTTTCTGTTATTTGGGAAGCTTGGAAGAGAAGATATGAGAAGGGTGACCGGAAAGATGACATTGAAAGCCTATCAAGGACGGCTGCAGATGCGCCTAAGATGTTCCGTTACAAGGAACTGTCAAAAGCTACTTGTAAATTCAACAAAGAAAATCTTGTAGGAAGAGGCGGGTTTGGAAGTGTTTATAAAGGGTTCACGGTGGAAAATGGAAAAACTATTGCAGTAAAGAAAATTTCCGCAACCTCTAAGCAAGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATCGGTCGTCTTCGACACAAAAACTTAGTCCAACTCCAAGGATGGTGCAATGAAGGAAAAAATCTTCTCTTAGTTTACGATTACATGCCAAACGGAAGCCTTGATCACTTCATAGGCAAGGACATTCTAGACTGGCAAACAAGGCACAAGATATTAACAGGATTAGCATCAGCATTACTTTACCTTCATGAAGAATGTGGAAATCCAGTAGTTCACAGAGATGTTAAACCTAATAATGTAATGCTTGATTTTAATTACAATGCTCATTTAGGCGATTTCGGACTCGCAAGGTTACTAAAAAACGAAGACTCAGTAACTACAAACTTAGCTGGAACACCAGGCTATTTAGCACCTGAAATAGGCTTCACAGGAAAAGCTACACCTGAATCAGATGTTTATAGCTTTGGTATGGTTATACTTGAAGTTATTTGTGGGAAAAGGTCGAAAAGGATAATGGAAGATAATAGTTTGGTGGATTATGTATGGAATTTACATGCTCAGAATCAAATTCTTGAGTGTGTTGATCAACAACTGAAAAGTAGTTTTGATGTTGAAGAAGCTAAAAGAGGTTTGATGGTTGGATTGGCATGTTTGCATCCAGATTCAATGTTTAGGCCAAAGATGAGGAAAGTTGTGCATATTTTTTTGAACCGAAATGAGCCTTTGATGGAATTACCTGAAGTGAGACCTACTGGAGTTTATGTATCGGTTTCTTGTACATCAATCACAGACTTTGTGTCTAGAACTGATCAGTTAGAGCTTCAATCATTCACTACATCTATGGACAATATTCCAACTTGTATGGAGTATGACCAATAG	2010	0.3761	MFIFLSLFILLIETLTATTSTVNSPTTFSFISFSPESCNNGELLCMGSATSGNGYISLTPEPEREQSNSSDSMFGTSDIANKVGKVLYPHPVHVWPAIITTTFTIRITPFLKNSTSSGDGIALVFAQDNRPSPNDSYGSYLGMFDRSTQDESFRQIGVELDTFMNEFDPDGNHIGIVTTSITNPIAFSSINSTNVDLKSGRNIMVKVDYNGWTKMISVSTGYSNSQLKSVLNHSINLPDIIPSSVYVGFTASTGKTFPETHQILNWFFTSVPLPVLSVKHSAIGKLKFLFIIVLPFLVLVSLLSVIWEAWKRRYEKGDRKDDIESLSRTAADAPKMFRYKELSKATCKFNKENLVGRGGFGSVYKGFTVENGKTIAVKKISATSKQGEREFLAEICTIGRLRHKNLVQLQGWCNEGKNLLLVYDYMPNGSLDHFIGKDILDWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDFNYNAHLGDFGLARLLKNEDSVTTNLAGTPGYLAPEIGFTGKATPESDVYSFGMVILEVICGKRSKRIMEDNSLVDYVWNLHAQNQILECVDQQLKSSFDVEEAKRGLMVGLACLHPDSMFRPKMRKVVHIFLNRNEPLMELPEVRPTGVYVSVSCTSITDFVSRTDQLELQSFTTSMDNIPTCMEYDQ	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g00342	669	ProSitePatterns	Legume lectins beta-chain signature.	156	162	IPR019825	-
	Vifa3g00342	669	PANTHER	-	70	616	-	-
	Vifa3g00342	669	Gene3D	Phosphorylase Kinase; domain 1	311	425	-	-
	Vifa3g00342	669	ProSiteProfiles	Protein kinase domain profile.	349	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g00342	669	CDD	STKc_IRAK	355	612	-	-
	Vifa3g00342	669	SMART	serkin_6	349	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g00342	669	ProSitePatterns	Protein kinases ATP-binding region signature.	355	379	IPR017441	GO:0005524
	Vifa3g00342	669	CDD	lectin_legume_LecRK_Arcelin_ConA	26	270	IPR001220	GO:0030246
	Vifa3g00342	669	Gene3D	Transferase(Phosphotransferase) domain 1	426	620	-	-
	Vifa3g00342	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Vifa3g00342	669	FunFam	probable L-type lectin-domain containing receptor kinase S.5	426	620	-	-
	Vifa3g00342	669	Pfam	Protein kinase domain	349	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g00342	669	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	24	281	-	-
	Vifa3g00342	669	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	271	IPR013320	-
	Vifa3g00342	669	Gene3D	-	25	279	-	-
	Vifa3g00342	669	Pfam	Legume lectin domain	27	271	IPR001220	GO:0030246
	Vifa3g00342	669	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	315	425	-	-
	Vifa3g00342	669	SUPERFAMILY	Protein kinase-like (PK-like)	334	642	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g00342	Vifa-Chr3	43717780	43720216	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g00342	28	648	Receptor kinase-like Gene Family	AT5G55830	38.462	1.34e-123	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vifa3g00342		Pkinase	2.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g00342	-		-	ccaj:109810929	928.702