Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00327 ATGGACGACGACTTCGACATAATGGACATGGACGTTCCGCTCCCCGAAGAACTCGAATTGCTCGAATCAAGCTATCGCATCTACGAACAAGACGATAACCTCTACTTCGACAACCCTCCCGAAGACGAACCCGAATTCCAACCCGAACAATCACCACCACCAGACCTCGCTTCTCCTCCCGAACCCCAATCCAACAGCCACAAACGCTCTCGCTCCTATTCGAATTCCGATTTGGATTCGGATTCTCCCGATGCTGAAAAGAGAGAGAAAGTTAGGGTTAGAGCTGAAGATCTTCCCGCCGACGAGGATTGGCTTCGGTACTCTCCTCCTCCTTCTCCGGTTACAGTTGAAGAAGTGAGATTCTCCAAGGAAAAGACATTGTCGCGATTTGCATCGGAGATTGATGGTGAAGTTATGCCGGTGACTGCACCTAATGGAGATAGGGTTTATACTAAGCTAGATAGATATTACGGTGAAGATCGAGCCACGGCGCTGAATATCGGAGGGTTTTCTTCTGATCTTGCTTTAGAACCGATCAGTGTTCTGTTTGAAAGGTTGGACGCAGAGACTTTTGCTAAGACCTTGGAAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACATTAACAGTCCATGAAACATTAACAGTCCATGAAAAACTTTGGGTGGATAAATATGCTCCGAAATCGTTTACTGATCTTCTTAGTGACGAACAGACAAATCGCGAGGTACTATTGTGGTTAAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGAGGATGTTTTGTCTGCTTTGAAACGGCATTCTTCTATTTCCCATAATCAGAAACCTCCGGGTTCAGGTTTTCCAAGGACAAAAGGAGGCCACATATGGAGTAATAATAAGTATACAAATTCTAGAAGTATGGATGGGAGTGATAATTCAAAGAGTAGTCAGGATGCACACGATGCCAAGACACGAAATGTTGGTGCACCAGAGCAGAAGATTCTTCTGCTATGTGGACCACCAGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGACGGAAAGGGTGCTGTGGAGGCTCTTCTAAAGATGATTTCTGCTGAAAGGAAGCATGATGCAGGGAAGCAGAGTTTGGATAAGGGACAAACAGAAAAGAAATCATCAAAGAAGGGGCGGAAAATTGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACTTATACGCACCTGCATTAAGATCATTACGTCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTGAGCAGACTAAAATATATATGTAACAAGGAGGGGGTGAAAGCCAATGCCATTGCACTCACTGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACAGTCCAGTTTCTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGACAAAAAATGTTCTAGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATGATAGAAAGGTCTCTGAATTTGACACATTGTACTCCCTTATATCATACCGTGGTGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAATGCCTCGACAGTCTTGAAGTTTATGATCTGTTGCATCAATATATAATGCGCACACAACAAATGCCTCTCCTTGTTCATTTGCCTCCCATAGCAATTATTGTACATCATACAGTAGCTCAAGTCCAGAAGCCTATCATTGAGTGGCCAAAGTCATATCACAAGTATCGAACAACAATGATGGAAAAGATGGACATTTTGAATACATGGCACTACAAAATCTCGCCACATATTGCAAGGCACTTATCAGCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCACCAAGCATAAGACCGGTGGCACTACAACTACTATCAGATAAGGAGAAGAATGATCTTGCTCAATTAGTTAGCACAATGGTGTCATATGCTATCACATATCAGAAAATGAAGTTAGATACGCTGCCTAATACCCTGAAGTATGGAGTGAAAGATGAATTGACTTTGTCTCTTGTTCCTCCTATCAGTAACTTTTTAAACTTTAAGGATTATACTTCAAACCATTATGAACTTTCTTTACCTATGAAGCAGGTTCTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGTCAAAACCGTGGGTTTAGAAAATGGTGGTCATGGAGCTATAGAGGCTGGAAGTAACTGTATCCCATTTGCCAATACCAACAATCATGCAGCTATAGTGGATAAGAAAACCATTGAAAGTCAAGCTAATGTTTCTGCAATGAAATCAAATGAAGCCAAGACAGTTTCACCAATCTTGAACCTCACTAACATGGTAAATGCAAAAGACAAAGTGAAACTGCTAGACATGGGAAATAGGAAAAAACCATCTAGGACTTCCTCAAGTTTCTTTGACAGGTTTATAAAGTCAAATGTAAAGGGCCTCCAAAATGATGACGGATCTCTACATAAAGAAACTACATCAGAGAAAGACCGAAGCCCTTTACTTTTTAAGTTTAATGAGGGTTTTACAAATGCAGTCAGAAGGCCTGTTCGAATGCGGGAATTTCTGTCATAA 2901 0.4116 MDDDFDIMDMDVPLPEELELLESSYRIYEQDDNLYFDNPPEDEPEFQPEQSPPPDLASPPEPQSNSHKRSRSYSNSDLDSDSPDAEKREKVRVRAEDLPADEDWLRYSPPPSPVTVEEVRFSKEKTLSRFASEIDGEVMPVTAPNGDRVYTKLDRYYGEDRATALNIGGFSSDLALEPISVLFERLDAETFAKTLEASSESQSVVDVPETLTVHETLTVHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSSISHNQKPPGSGFPRTKGGHIWSNNKYTNSRSMDGSDNSKSSQDAHDAKTRNVGAPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEALLKMISAERKHDAGKQSLDKGQTEKKSSKKGRKIASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKANAIALTALAEYTACDIRSCLNTVQFLSKKKETLNAFDIGSQVVGQKDMTKNVLDIWKELFQRKRTKKMERKSHDRKVSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLDSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPIIEWPKSYHKYRTTMMEKMDILNTWHYKISPHIARHLSATSFVEDLISPLLHILSPPSIRPVALQLLSDKEKNDLAQLVSTMVSYAITYQKMKLDTLPNTLKYGVKDELTLSLVPPISNFLNFKDYTSNHYELSLPMKQVLVHEVEKHKILQANVKTVGLENGGHGAIEAGSNCIPFANTNNHAAIVDKKTIESQANVSAMKSNEAKTVSPILNLTNMVNAKDKVKLLDMGNRKKPSRTSSSFFDRFIKSNVKGLQNDDGSLHKETTSEKDRSPLLFKFNEGFTNAVRRPVRMREFLS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00327 966 MobiDBLite consensus disorder prediction 72 95 - -
Vifa3g00327 966 Gene3D - 221 483 IPR027417 -
Vifa3g00327 966 Gene3D - 485 555 - -
Vifa3g00327 966 MobiDBLite consensus disorder prediction 298 316 - -
Vifa3g00327 966 MobiDBLite consensus disorder prediction 429 449 - -
Vifa3g00327 966 SMART AAA_5 334 488 IPR003593 GO:0016887
Vifa3g00327 966 Pfam ATPase family associated with various cellular activities (AAA) 338 464 IPR003959 GO:0005524|GO:0016887
Vifa3g00327 966 MobiDBLite consensus disorder prediction 24 95 - -
Vifa3g00327 966 CDD AAA 333 422 - -
Vifa3g00327 966 MobiDBLite consensus disorder prediction 45 60 - -
Vifa3g00327 966 MobiDBLite consensus disorder prediction 276 329 - -
Vifa3g00327 966 MobiDBLite consensus disorder prediction 429 448 - -
Vifa3g00327 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 539 IPR027417 -
Vifa3g00327 966 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 8 965 - -
Vifa3g00327 966 CDD HLD_clamp_RFC 485 543 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00327 332 792 Core DNA Replication Machinery Family AT5G22010 23.413 2.66e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00327 K11269 - gmx:100785041 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00327 3 39097435 39127278 Vifa3g00327 3 39097435 39127278 ECH