Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00325 ATGTTTAGGAACATGAAGGAGGGAAGAGGTTATGCAAAAGGGTATTATTATGTTAATTTGTTGCTACTATTGAGTTTACTCTTTTGTAGCATAGAAGGGTTGAATTTAGAGGGACAAATTCTCTTGGAGATCAAGAATGGACTTGATGATAAGTATAATGTTTTGGGAAATTGGAAATCTAGTGATGAAACTCCATGTGGATGGGTAGGTGTAAATTGCATTTATGAAAATATCAGTGGTAGTGGTAGTGATCCAGTGGTTGTTTCTCTTAATTTGAGTTCTATGGATCTTTCTGGAACTCTAAATGGTAGCATTGGGGGTCTTAACAAGTTAACTTATCTCGATCTTGCTTATAATGGTTTGAATGGGAATATGCCGAAGGAGATTGGTGAGTTGTTGAGTTTGGAATATCTTTACTTGAACAATAATCAATTTGAGGGACCGATTCCGGTTGAATTAGGTAAGTTGTCTGTTTTGAGAGATTTGAATATTTGCAACAATAAACTCTCCGGTGTTATTCCGGTTGAGTTTGGAAAATTGTCTTCATTGGTTGAGTTAGTTGCCTATAGCAACTTTCTCATTGGCCCGTTGCCTAATTCTCTTGGAAATCTTGAGAATCTCGAGACTTTCAGAGCTGGGGCGAATAACATTACGGGTAGCTTGCCGGTAGAAATTGGCAGATGTAGGAGGTTGGTGCGTCTAGGTCTTGCTCAAAATCAAATCGAAGGGGAGATACCGAAGGAGATTGGGATGCTTGAAAACTTAAAAGAATTGGTTTTATGGGAAAACAAGCTATCAGGAGTTCTTCCTAAAGAGCTTGGGAATTGTAGCAGGCTTGAGACCCTTGCCTTATACGGAAATATTCTTGTTGGACCGTTACCTAATGAGATTGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGAAATAAGTTGAACGGATCAATTCCAAGGGAAATTGGAAATCTTTCATCAGCTTTACACATTGATTTCTCAGAGAATTCATTGGTAGGCGATATCCCTTCGGAGTTCAGCAAAATCCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAATCATCTTACTGGTGTGATACCAAATGAGTTTGGTAGCTTGAAGAACCTGACAAAGCTGGACCTGTCGATAAATAATCTTACTGGTCCGATTCCGCCCGGTTTTCAATATTTGACTCATATGTATCAGCTGCAACTTTTCGACAACAACCTAAGTGGTGCTATTCCTCAGGGACTTGGACTTTATAGTCGTCTTTGGGTGGTTGATTTTTCCGACAACAACTTGACGGGAAATATACCTCCTTATCTATGCCGACACTCTCATTTGATGCTGTTGAATCTTGCCGATAATCAGCTTTATGGAAACATACCAACAGGTATATTGAACTGTGAATCATTGGCACAGTTGCTTTTGGTCGGTAACAGGCTAACTGGTGGTTTCCCTTCGGAATTGTGTAAACTTGAGAACCTTACCGCCATTGATTTGAATGATAACAGGTTTACCGGTCCGCTTCCTCGTGAGATTGCAAACTGCCACAATTTGCAAAGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCTAATCTTTTCACCGGAAGAATCCCTCCTGAAATTTTTTGGTGCCAGAGGCTGCAGCGGCTTGATCTCAGTCAGAACCGTTTTACTGATTCGTTGCCGAATGAAATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCGGACAATAAATTGTCTGGAAATATTCCTGCAGCATTAGGCAATCTGTCTCATTTGAACTGGCTGCTTATGGACGGTAATTTGTTTTTCGGTGAAATACCTCCTCAGTTGGGTTCTCTTTCGAGCTTACAGATAGCAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCGTCTCGCCTTGGCAGTCTCAATATGCTTGAATATCTCTTTCTCAATAACAACCAATTGGATGGCGAAATTCCGAGTACTTTTAGCGCACTTTCTAGCTTGATGGGATGTAATTTCTCATACAATAACCTCTCTGGACCTATCCCTTCGACTAAAATTTTCGAAAGTATGGCTCTAAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGCGGTACACCTCTCGTTGACTGCAATAGTATTACAGGTTCTCGCTCTATTCCCTCGGCGAAAGACGGTGATTCTTCGCGTGCTAAAATTGTCATGATCATTGCAGCTACCGTTGGCGGTGTTTCTCTCATTTTGATTATAGTTATTTTATATTTAATGAGACGACCTCGGGAGCCTGTTGATTCCTTTGAAGACCCTGAAACTCTCTCGCCAGATTCGGATATCTATTTCCCTCCCAAAGACGGTTTCACATTTCAAGACCTACTTGAAGCAACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGTGGAGCATGCGGAACAGTTTATAAGGCAGTGATGAAATCCGGTAAGACAATTGCTGTTAAGAAGCTAGCGTCGAATCGGGAAGGGAACAACGTCGATAACAGTTTCAGAGCTGAAATATCAACACTAGGAAGGATAAGGCATCGGAATATAGTGAAACTGTACGGTTTTTGTTATCATCAAGGTTCCAATCTCTTACTTTATGAATACATGGAAAGAGGTAGCTTAGGTGAAGTATTGCACGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCTGAAGGCCTTGCTTACTTGCATCATGACTGTAAACCGAAGATTATTCACCGGGATATAAAATCTAACAACATCCTTCTAGATGAAAATTTTGAGGCACATGTTGGTGATTTCGGCTTGGCGAAAGTGATTGACATGCCTCAGTCAAAGTCAATGTCCGCTGTCGCTGGATCTTACGGATACATCGCTCCTGAATATGCATATACCATGAAGGTTACAGAGAAGTGTGACATATACAGTTACGGCGTTGTGCTGTTGGAATTGCTAACTGGAAAATCTCCGGTTCAACCGATGGAGCAAGGAGGCGATCTTGTTACATGGACGAGAAACCATATTCGGAACCATGACAATACATTGAGCTCAGAGATACTCGATACTCGTCTTGATCTTGAAGACCAAGTCACTATAAACCACATGCTCACTGTTTTGAAACTTGCTTTAATGTGCACAAGTATGTCTCCGTCTAAGCGTCCATCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCGAATGAGCGAGAAGGATACTTAACACTTACTCGAACAAACCATGACCCTCCTTCTAAAGATAACACATGA 3351 0.4094 MFRNMKEGRGYAKGYYYVNLLLLLSLLFCSIEGLNLEGQILLEIKNGLDDKYNVLGNWKSSDETPCGWVGVNCIYENISGSGSDPVVVSLNLSSMDLSGTLNGSIGGLNKLTYLDLAYNGLNGNMPKEIGELLSLEYLYLNNNQFEGPIPVELGKLSVLRDLNICNNKLSGVIPVEFGKLSSLVELVAYSNFLIGPLPNSLGNLENLETFRAGANNITGSLPVEIGRCRRLVRLGLAQNQIEGEIPKEIGMLENLKELVLWENKLSGVLPKELGNCSRLETLALYGNILVGPLPNEIGNLKSLKWLYLYRNKLNGSIPREIGNLSSALHIDFSENSLVGDIPSEFSKIRGLSLLFLFENHLTGVIPNEFGSLKNLTKLDLSINNLTGPIPPGFQYLTHMYQLQLFDNNLSGAIPQGLGLYSRLWVVDFSDNNLTGNIPPYLCRHSHLMLLNLADNQLYGNIPTGILNCESLAQLLLVGNRLTGGFPSELCKLENLTAIDLNDNRFTGPLPREIANCHNLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFTDSLPNEIGTLQHLEILKLSDNKLSGNIPAALGNLSHLNWLLMDGNLFFGEIPPQLGSLSSLQIAMDLSYNNLSGRIPSRLGSLNMLEYLFLNNNQLDGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMALSSFVGGNIGLCGTPLVDCNSITGSRSIPSAKDGDSSRAKIVMIIAATVGGVSLILIIVILYLMRRPREPVDSFEDPETLSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGEVLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPMEQGGDLVTWTRNHIRNHDNTLSSEILDTRLDLEDQVTINHMLTVLKLALMCTSMSPSKRPSMREVVLMLIESNEREGYLTLTRTNHDPPSKDNT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00325 1116 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 198 291 - -
Vifa3g00325 1116 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Vifa3g00325 1116 Pfam Leucine rich repeat 566 624 IPR001611 GO:0005515
Vifa3g00325 1116 Gene3D Ribonuclease Inhibitor 359 465 IPR032675 -
Vifa3g00325 1116 Gene3D Ribonuclease Inhibitor 34 200 IPR032675 -
Vifa3g00325 1116 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 33 197 - -
Vifa3g00325 1116 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Vifa3g00325 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672|GO:0006468
Vifa3g00325 1116 Gene3D Ribonuclease Inhibitor 206 358 IPR032675 -
Vifa3g00325 1116 Gene3D Ribonuclease Inhibitor 468 735 IPR032675 -
Vifa3g00325 1116 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 786 895 - -
Vifa3g00325 1116 SUPERFAMILY L domain-like 234 639 - -
Vifa3g00325 1116 SUPERFAMILY L domain-like 629 703 - -
Vifa3g00325 1116 SUPERFAMILY Protein kinase-like (PK-like) 799 1091 IPR011009 -
Vifa3g00325 1116 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 420 735 - -
Vifa3g00325 1116 SUPERFAMILY L domain-like 38 314 - -
Vifa3g00325 1116 SMART LRR_typ_2 540 564 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 204 228 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 252 275 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 492 516 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 132 156 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 300 324 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 661 684 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 588 612 IPR003591 -
Vifa3g00325 1116 SMART LRR_typ_2 372 395 IPR003591 -
Vifa3g00325 1116 ProSiteProfiles Protein kinase domain profile. 818 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00325 1116 Gene3D Transferase(Phosphotransferase) domain 1 896 1107 - -
Vifa3g00325 1116 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 292 396 - -
Vifa3g00325 1116 SMART serkin_6 818 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00325 1116 Gene3D Phosphorylase Kinase; domain 1 792 895 - -
Vifa3g00325 1116 SMART LRR_sd22_2 300 326 - -
Vifa3g00325 1116 SMART LRR_sd22_2 492 518 - -
Vifa3g00325 1116 SMART LRR_sd22_2 180 209 - -
Vifa3g00325 1116 SMART LRR_sd22_2 661 687 - -
Vifa3g00325 1116 SMART LRR_sd22_2 372 398 - -
Vifa3g00325 1116 SMART LRR_sd22_2 588 614 - -
Vifa3g00325 1116 SMART LRR_sd22_2 108 135 - -
Vifa3g00325 1116 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 896 1108 - -
Vifa3g00325 1116 Pfam Protein kinase domain 819 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00325 1116 PANTHER UNNAMED PRODUCT 395 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00325 Vifa-Chr3 38273009 38276607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00325 37 1093 Receptor kinase-like Gene Family AT5G56040 37.767 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g00325 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00325 - - gmx:100805792 1768.44