Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00324 ATGGGAAAGAGAGTTAGGGATAAAGAGAGTGGAATTTCTAATGGAATAAATAGCCATCATACTCATGCAGGAAGAGTTTGGGGAATTCTTCATATAATAAAGTATCATCATTGGCGTCATGTTAAGAGAAGGATTACTCAAAGGAGGCCTTGTAATGGACCTGATGATTCAAGAAATGATGAAATTCCAGAAACTTCTGATGATTCTATGAGAGAGAATTTGAGGCCAAGTATGCCTTTATCTAATGTTGAAGAAGAAAATAAGCTTGGACAAAGCACTCAACAAAACAAATACTCAATAAAATCAAAAATAAAAGCACTTCTTAACGAAGAAACATACAAAATGAGAGGGAGACACAAGAGAAGCTCAACCTGTCCTACAAAATCGCAGCTAACTCGAATCGATTCAGTTCATCACTTGGAAGTTGATCCCCTGAGTGAAATGCTGTTAACAGTTGAGAATCGAGAACCAGTTCTAGAAACTTTTCAAAACCATCTTGCAGCAGGAACATTGGAAGTTTTGTCACCGGTTATCTCAAGGAAAAACTCGCTCTCCAATAACAGCAACGACAAATGCGTTGAATGCGGGGCAGCGTTTTCTAGTGAACCTTTGGAAAAACATGATCACAGGAGTCATCATAAGCATCGCAATCTATCGATGAGCGACGGATTGCAGGAAGATAAACTGATAAACGCGAAAATACTCACAACCGATGCTTCTCCGCTTCTTTTCAAGGATTTTCTTGATGCTCTTGATCTTATCAACACAAACAAAGACTTTCTATTGAAATATATGAATGATCCTGGCTCTCCTTTGCCATTTGAACTTCATACTCAACCACATTCTCCGAACGCTAAATCGAGACGAGCCAAATCCATCTCATTACCTGTTGGTGGATCATCTTCTTCTGACAACTTGGTAGATGAATTGTTGAATTCAAAAAAAGAGATAGAATCAGAAATTCAAAATTTAGCAGATTTTCACAAACCATCAACTTCTTCTTCTCCTTCTTCTTCGCATAAAGCTAATCATCAACTAGTCCAATCGGATCAAGAATCGGTTGAACGAGACTATAAAGAAACTTCGTCAGGCTCGTCCCAAGTTTCAAACAATGTGAAGAATAAGAACTTCAAGGATCTCAGAAAAAAGATAAAGCATATAATCGAAGAAAGCAAAAACGAAAAGCTTCGCATTAAGATGGACGCTGTAGTCGACAAAATTCCGCGTGGCAACAAGTTTTCCAAGAATGTAAGGAAGTTGATGAGCCACGAAAAGTTCAAACAAAACAATAAGCATCAACTATCATCAGGCTTGAGGACATCGTCTCTAAAAGAATCGGTCGGTCGATACTCTCAGCTTTATGATACTTGTTTTCACAAAGAAGTTGTTAGCAATAAAGAAGAGAAGCCTCCTAAGAGTGATAGCTTAAAGCTGAAAACAGAAGAGAAAAGTTCGGTATTGAAGACACCGAAATCGTTCAAAAGGTTTCTTTCATTACCTAATCTAAAATCATATTTCAACCAAAATGAAGACCCTTCTGTTCTCTTGTCTCCTCAGAATTCAGTTAGAAAATCTGAAGATAGAACTAGAAGCTCAAGTTTAATTGATGGCTACTCAAATAGTGAAATTCTCTCACCTTCACCTGCACCTTCTGATCATACAAATGAAGAAAGCAAAGTTATTGTTAACACTGCTTCGGATTCAGGATCAGATGTTAACGACGACGACGTAAAGTCGGAAAAGAGTATAGGATTTGATGGTTTAGGTAACTTGAGAGACACGCAATTTTCTGGTAGCAATGAACAAGACATTGGTTATGCAACAGAATCAAGTACTATGTTGGTTGAAGGAAACTCAGCTTTCTCTTCTGATACCAGCTTCTTAGATTCTACATTTGAGTTGGAAAACTTAAATATATTAGAAGAATCAGATCAAGAGTTAAAGCCAATGCTAGCTGGTGATGAGTTGAACTATATGTATGAGCAACAAGAGGCAAAAACAGACCAGTTTGAGGAGGTTGAGAATTTTCTTAAGCATGGATATAAAATTCCATGCAACGAAATTGATACGAATAACGAAGCTGCGTTTAATTATGTGAAGAAAGTTTTAGACCTCTCGGGTTTCACTAGCAATGAGTCTCTTGAAACATGGTATTCTGATTACCAACCACTTGATCCATCGATTTACCAAGAACTAGAGGGATGTTTGCTTCTTGATCCCGATTGTTCTGGCAATTGTGAAGGCGGACATTGCAATCATCTTCTTTTGTTTGATATAATCAATGAAGGATTGTTGGAGATTTTTGGTAGATCGTATAACTATTATCCTAGACCATTGTCTTCTCTATCTCATGTTCATCGATTGCCAAATGGAAGAGATGATGTTTTACATAAAGTATGGAAACTTATTACTTGGTATCTCAGTTCAGCTCCTCCTGATGAGGCTTATCAATCATTGGATTACTATGTTAGTAAAGATCTAGCAAGAAATGATGGGTGGATGAATCTTCAGTTTGATTCTGAATGTGTCGGGCTTGAGATAGATGATTTGATTTTCGATGATCTCTTGGACGATATTATCTACTCTTAA 2589 0.3731 MGKRVRDKESGISNGINSHHTHAGRVWGILHIIKYHHWRHVKRRITQRRPCNGPDDSRNDEIPETSDDSMRENLRPSMPLSNVEEENKLGQSTQQNKYSIKSKIKALLNEETYKMRGRHKRSSTCPTKSQLTRIDSVHHLEVDPLSEMLLTVENREPVLETFQNHLAAGTLEVLSPVISRKNSLSNNSNDKCVECGAAFSSEPLEKHDHRSHHKHRNLSMSDGLQEDKLINAKILTTDASPLLFKDFLDALDLINTNKDFLLKYMNDPGSPLPFELHTQPHSPNAKSRRAKSISLPVGGSSSSDNLVDELLNSKKEIESEIQNLADFHKPSTSSSPSSSHKANHQLVQSDQESVERDYKETSSGSSQVSNNVKNKNFKDLRKKIKHIIEESKNEKLRIKMDAVVDKIPRGNKFSKNVRKLMSHEKFKQNNKHQLSSGLRTSSLKESVGRYSQLYDTCFHKEVVSNKEEKPPKSDSLKLKTEEKSSVLKTPKSFKRFLSLPNLKSYFNQNEDPSVLLSPQNSVRKSEDRTRSSSLIDGYSNSEILSPSPAPSDHTNEESKVIVNTASDSGSDVNDDDVKSEKSIGFDGLGNLRDTQFSGSNEQDIGYATESSTMLVEGNSAFSSDTSFLDSTFELENLNILEESDQELKPMLAGDELNYMYEQQEAKTDQFEEVENFLKHGYKIPCNEIDTNNEAAFNYVKKVLDLSGFTSNESLETWYSDYQPLDPSIYQELEGCLLLDPDCSGNCEGGHCNHLLLFDIINEGLLEIFGRSYNYYPRPLSSLSHVHRLPNGRDDVLHKVWKLITWYLSSAPPDEAYQSLDYYVSKDLARNDGWMNLQFDSECVGLEIDDLIFDDLLDDIIYS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00324 862 MobiDBLite consensus disorder prediction 508 522 - -
Vifa3g00324 862 PANTHER PROTEIN TRM32 1 862 IPR044257 -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 48 71 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 273 306 - -
Vifa3g00324 862 Pfam Protein of unknown function (DUF3741) 228 270 IPR022212 -
Vifa3g00324 862 Coils Coil 307 327 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 508 584 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 360 374 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 46 97 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 280 306 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 327 374 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 327 349 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 532 570 - -
Vifa3g00324 862 MobiDBLite consensus disorder prediction 464 484 - -
Vifa3g00324 862 Pfam Domain of unknown function (DUF4378) 696 858 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00324 Vifa-Chr3 38236802 38239785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00324 688 852 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 55.882 7.08e-56 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00324 - - psat:127093390 1144.03