Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00322 ATGGCCGATTCAGACAACGAGTCAGGAGGAGCACCGAACGCAGGTAATAGCGAGCTATCACCTCGTGAGCAAGACCGATTCCTACCGATAGCGAACGTGAGTAGAATCATGAAGAAAGCGTTACCGGCGAACGCGAAGATATCGAAAGACGCGAAAGAAACCGTTCAAGAATGCGTCTCGGAGTTCATAAGCTTCATTACCGGCGAAGCCTCCGATAAGTGTCAGAGAGAGAAACGGAAGACGATCAACGGCGACGATCTACTCTGGGCGATGACTACGTTAGGGTTTGAAGAGTACGTTGAACCGTTGAAGATTTATCTTCAACGTTTCAGAGAGATCGAAGGTGAAAGAACCGTTGCGGCACGTGACAAAGACGTTGCTCCTTCTTCTTCTTCATCTTCGGTTTTCGAATACGGTGCTCCTCAAATGATCATGCAGCATCAGCATCATCATCAGCAGAATCAGCATCAGGGACACGTGTACGGTTCTGGTGGTTACCATCAGGTTCCTGGTGGGGCAGGTTATCCGAATGCTGGATCTAATGCGGGTAGACCCAGGTAG 561 0.4955 MADSDNESGGAPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGERTVAARDKDVAPSSSSSSVFEYGAPQMIMQHQHHHQQNQHQGHVYGSGGYHQVPGGAGYPNAGSNAGRPR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00322 186 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa3g00322 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Vifa3g00322 186 MobiDBLite consensus disorder prediction 146 161 - -
Vifa3g00322 186 SUPERFAMILY Histone-fold 24 135 IPR009072 GO:0046982
Vifa3g00322 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa3g00322 186 FunFam Nuclear transcription factor Y subunit B-3 16 138 - -
Vifa3g00322 186 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vifa3g00322 186 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vifa3g00322 186 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vifa3g00322 186 Gene3D Histone, subunit A 16 160 IPR009072 GO:0046982
Vifa3g00322 186 MobiDBLite consensus disorder prediction 146 186 - -
Vifa3g00322 186 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00322 Vifa-Chr3 37789368 37789928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00322 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.950 5.86e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa3g00322 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00322 K08065 - gmx:100813580 263.848