Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00317 ATGGTGGCTTCTGTGAAATGGATTCTCAATGTTTGTTTCTTGTTGTTGCTTTTTGTGTTGCTCGTTGAAGAAGAAGCTGTAGCGTCACCACAGATCTCTCAGTTCGGCAATGTGGATGTTGAGACACACAGGTTAACAAGCTTTAACGATTCATCAATGCCGGCAAGGCAAAAAGAAGCTGAGAAATTGAATGAGCGTGCTGCCGTGGCTGATCCGAAGGAGGTTGTTTCTATGGTTGAGATGCACATTAAGAACAGCACTGAAAGAAGAAACCTTGGATATTTCTCGTGTGGAACGGGTAATCCGATTGACGATTGCTGGCGTTGCGACCCGAATTGGCAACAGAACAGGAAGCGTCTGGCAGACTGTGGTATTGGTTTTGGCAGAAACGCTATTGGTGGCCGCGATGGAAAGTTCTATGTTGTCACTGACCCGAGAGACGACGACCCTGTTAACCCAAGGCCGGGAACTTTGCGTCATGCTGTTATCCAAGATAGGCCACTTTGGATTGTGTTCAAGAGAGACATGGTTATTCAGTTGAAACAAGAGCTTATTATGAACAGTTTCAAGACAATTGATGGAAGAGGAGCAAATGTGCATATTGCGAACGGAGCGTGCATTACGATTCAGTATGTTACTAATGTTATCATTCATGGCCTTCATATTCATGATTGTGTACCTACTGGTAATGCTATGGTGAGAAGCTCCGAAACACATTTTGGTTGGAGGACTATGGCTGATGGCGACGCTGTTTCTATATTTGGTTCAAGTCATATTTGGGTTGATCATAATTCTTTGTCTCATTGCGCTGACGGTCTTGTTGATGCTGTCGTCGGTTCAACAGCTATAACAATTTCTAACAACCATTTCACCCACCACAATGAGGTGATTCTGTTGGGCCACAGTGACTCCTACACAAGGGACAAGCAAATGCAAGTGACCATAGCTTATAACCATTTTGGAGAGGGACTTATTCAGAGAATGCCTCGGTGTAGACATGGTTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTGAGCCCACAATCAACAGCCAGGGTAACAGATACAATGCTCCTGTTAACCCATTTGCCAAAGAGGTAACTAAGAGAGTGGAAACAGCTGAAAGCCAATGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGTATCTAAATGGTGCATACTTCACAGCATCTGGTGCTGGAGCTTCAGCTAGCTATGCAAGAGCCTCAAGCTTAGGAGCAAAATCTTCTGCTATGGTTGGCACCATGACATCAAATGCTGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAA 1350 0.4467 MVASVKWILNVCFLLLLFVLLVEEEAVASPQISQFGNVDVETHRLTSFNDSSMPARQKEAEKLNERAAVADPKEVVSMVEMHIKNSTERRNLGYFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCVPTGNAMVRSSETHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVVGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTMTSNAGALGCKRGRQC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00317 449 SUPERFAMILY Pectin lyase-like 76 443 IPR011050 -
Vifa3g00317 449 Gene3D - 100 442 IPR012334 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Vifa3g00317 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Vifa3g00317 449 SMART amb_all 175 372 IPR002022 -
Vifa3g00317 449 FunFam Pectate lyase 100 442 - -
Vifa3g00317 449 Pfam Pectate lyase 182 364 IPR002022 -
Vifa3g00317 449 PANTHER PECTATE LYASE 18-RELATED 64 447 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00317 Vifa-Chr3 37290343 37293917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00317 40 449 Polysaccharide Lyase AT4G13710 79.036 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00317 K01728 - gmx:100808253 796.578