Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00302 ATGGAAGAGGTACAAGTGACTGATGAAGGTATGGTTGAAGAAGAAAAGGAAGAGGAAACCTTAAACAAAATGTTGAAGGAAGTAGCTAAAGACAAAAAGGAGATGAGAGTTGATACATCTAAAAAGACAAAAACTGAAAAGAAGGTTACTGAGAAGATTGCTGAGAAAATTGATGAAGAGATTATGGAGGAATTTAACACTGAAGTCGATGAGGAGGAAGAGAAAAATAAGAGTGAATTTGAAAAGAAGGGTGAAGATAATGATAAGGAAATGCATGATTCAAGTGATGCGGCTGAGGATAATTCTGGTGAGGAGGAAGATCAAGACAATGAAAAATCTAGAGTTAAGGCTATGTCAGTAGAGGTTAAAGACATTGTAGAACAAAAGACAATCACCTCTGAGAAGAAGAAGAAGCCAGTAAGGGTCAACACTCCTTACCCGGCCAAGAAAACTAAAAAGCAAGTTTCCCCAGCCAAGCCAGCAGCCAAGGCAAAGACCCCTCCTAAGAAAGTCCCTGTCAAGGCTGATATCATCCATGTGGCACCAAAATCTCTCAATTTTCTTTTGGGGTTTCTTCTCTCTCTTTGCTGCTTCTTACTCGCTCTCTTGTCTCACAACAACAAGTACACAAACGCAAACGCAAAAGCTGGGATGGAAGCCCTTGGTTCTGTGGATGACCTTTTGGATTTCTCATCTGACATAGGCGAGGATGATGATGACAACACAAAGAAAACCTTTCCTTCACTTGAACCGAAGAGCGGTGATCAACTGTCGCTTGATACATTAGACCTGGTCGATCCAAATTCATTGTCTGAGTGTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACTTAGCCTGCATTCAACCAGATATTTTGAAGTATCAAAGGACAGCCCCGATGCTCGAGAACAGCACAAGCAGTAGCAACAGCAATAACAGTAGCAACAGCATTACCCTGCTAAGTGGCTACAATCACATAAAGTTCCCTGTCCGAGCACGGAGCAAGTCTCGCAGTAAGCCTCGCCTTGGCCTTGCTGACACCTCTAACCAGCTATTCTCGTGGAGACTACCGAGTAACAAAGATTCAAAAAAACAAGCGGTACAAACCTTAGCCATTGGGAGGAAATGTAATCACTGTGGAGCAGAAAGTACACCACAATGGCGGGCTGGTCCAGATGGTCCAAAAACACTTTGTAATGCATGCGGGGTTAGGTATAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGTGACGTGCATTCCAATTCCCACAGGAAAGTATTGGAGATGAGGAAGCATAAGGGAATGGGTTGA 1371 0.4325 MEEVQVTDEGMVEEEKEEETLNKMLKEVAKDKKEMRVDTSKKTKTEKKVTEKIAEKIDEEIMEEFNTEVDEEEEKNKSEFEKKGEDNDKEMHDSSDAAEDNSGEEEDQDNEKSRVKAMSVEVKDIVEQKTITSEKKKKPVRVNTPYPAKKTKKQVSPAKPAAKAKTPPKKVPVKADIIHVAPKSLNFLLGFLLSLCCFLLALLSHNNKYTNANAKAGMEALGSVDDLLDFSSDIGEDDDDNTKKTFPSLEPKSGDQLSLDTLDLVDPNSLSECAEEELEWLSNKDAFPAVETFVDLACIQPDILKYQRTAPMLENSTSSSNSNNSSNSITLLSGYNHIKFPVRARSKSRSKPRLGLADTSNQLFSWRLPSNKDSKKQAVQTLAIGRKCNHCGAESTPQWRAGPDGPKTLCNACGVRYKSGRLVPEYRPANSPTFCSDVHSNSHRKVLEMRKHKGMG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00302 456 Pfam GATA zinc finger 388 421 IPR000679 GO:0006355|GO:0043565
Vifa3g00302 456 MobiDBLite consensus disorder prediction 57 167 - -
Vifa3g00302 456 FunFam GATA transcription factor 376 456 - -
Vifa3g00302 456 ProSiteProfiles GATA-type zinc finger domain profile. 382 418 IPR000679 GO:0006355|GO:0043565
Vifa3g00302 456 CDD ZnF_GATA 387 444 IPR000679 GO:0006355|GO:0043565
Vifa3g00302 456 MobiDBLite consensus disorder prediction 107 141 - -
Vifa3g00302 456 MobiDBLite consensus disorder prediction 71 98 - -
Vifa3g00302 456 PANTHER GATA TRANSCRIPTION FACTOR 219 454 - -
Vifa3g00302 456 ProSitePatterns GATA-type zinc finger domain. 388 413 IPR000679 GO:0006355|GO:0043565
Vifa3g00302 456 MobiDBLite consensus disorder prediction 232 253 - -
Vifa3g00302 456 SMART GATA_3 382 432 IPR000679 GO:0006355|GO:0043565
Vifa3g00302 456 Gene3D - 383 432 IPR013088 GO:0006355|GO:0008270
Vifa3g00302 456 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 385 445 - -
Vifa3g00302 456 Coils Coil 11 34 - -
Vifa3g00302 456 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00302 Vifa-Chr3 35352306 35360821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00302 372 456 C2C2-Gata Transcription Factor Family AT3G24050 72.941 2.78e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa3g00302 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00302 - - psat:127090991 430.639