Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00291 ATGACTAACACCTTCAATGAGTTTCCTAATTTCTTCAAAGTCTTCCTTCCAGAAAAACACTCTGACAGAATGCTTATCCCAGTTGCTTTTGTGAAGCTGATGATTTCAAAACAAAAGGTATTGAAAAATTATATCTTCAGAGATCAAAGAGGAAGAGATTGGAAAGTTAAAGCACGTCCTATTGACGGCAAGCTTTATTTTGATGATGGTTGGAAGCAATTCAAAGATGAAAATTCTTTAGAGCAGAACGACTTCATTGTTTTCACACATATTGAAAACAATGTGTTTAAGATTAAAATTCTTGAACTGTCGTCTAGGTGTGAAAAGATGAAGGTAATGGATGAAGAGGAAAAGAATGACGATGATGATGATGATGGTAGTGATGACGAGGATTATAATGTTGTTGATGATGATGTTGATGTTGATGATGATGATGATGATTTTAGTGATGATGACGATGATGATGAAGTTAGTAGAAATAAATATCAACATTGTAGAACCTGCAAAGCATGTGGCATCGGGAGCAGCTCTATGGTTCGAAAACTTGAAACAGATGAAATTGATGCTGAAATGTATATTCAGCCTGGAAATCCCTATTTTTTTGCGAAATACTATCATTACAGACCCAATGAATTGCATATACCAAAAAAAGTTATTAAGGATTTCTGCCTCTGCTTCACAAAACATGTCAACCTTATATGTTGCAACTGCAAGGGTATTGAGAGCAATGAAATAGCATCTTATCATGAGAAGTTGCCCGAAATGACCACAAAACATAGCAAAAAGAGAGGAGAAATACGTACATGGAAAAATGGCCGAGTATTTGTGTTGGGGTGGGAAAAATTTTGGGCCAAGTACAAGATTAAAGAAAGTGATAGCTGCTTGTGTGAAATTGTGTTGCATCAAGAGAAAGCAATAGAAATGATAAGGGTGCACCTTGTTAGGAAGGTTAGGAATGAATGA 963 0.3572 MTNTFNEFPNFFKVFLPEKHSDRMLIPVAFVKLMISKQKVLKNYIFRDQRGRDWKVKARPIDGKLYFDDGWKQFKDENSLEQNDFIVFTHIENNVFKIKILELSSRCEKMKVMDEEEKNDDDDDDGSDDEDYNVVDDDVDVDDDDDDFSDDDDDDEVSRNKYQHCRTCKACGIGSSSMVRKLETDEIDAEMYIQPGNPYFFAKYYHYRPNELHIPKKVIKDFCLCFTKHVNLICCNCKGIESNEIASYHEKLPEMTTKHSKKRGEIRTWKNGRVFVLGWEKFWAKYKIKESDSCLCEIVLHQEKAIEMIRVHLVRKVRNE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00291 320 Gene3D - 3 107 IPR015300 -
Vifa3g00291 320 Gene3D - 180 317 IPR015300 -
Vifa3g00291 320 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Vifa3g00291 320 Coils Coil 319 320 - -
Vifa3g00291 320 PANTHER B3 DOMAIN-CONTAINING 7 303 - -
Vifa3g00291 320 CDD B3_DNA 9 101 IPR003340 GO:0003677
Vifa3g00291 320 SMART B3_2 11 104 IPR003340 GO:0003677
Vifa3g00291 320 MobiDBLite consensus disorder prediction 114 158 - -
Vifa3g00291 320 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Vifa3g00291 320 MobiDBLite consensus disorder prediction 117 154 - -
Vifa3g00291 320 SUPERFAMILY DNA-binding pseudobarrel domain 193 299 IPR015300 -
Vifa3g00291 320 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00291 Vifa-Chr3 33993030 33994321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00291 8 315 B3 DNA Binding Superfamily AT3G06160 25.000 1.37e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g00291 B3 2.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00291 - - mtr:120578114 390.193