Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00290 ATGACTAACACCTTCAATGAGTTTCCTAATTTCTTCAAAGTCTTCCTTCCAGAAAAACACTCTGACAGAATGCTTATCCCAGTTGCTTTTGTGAAGCTGATGATTTCAAAACAAAAGGTATTGAAAAATTATATCTTCAGAGATCAAAGAGGAAGAGATTGGAAAGTTAAAGCACGTCCTATTGACGGCAAGCTTTATTTTGATGATGGTTGGAAGCAATTCAAAGATGAAAATTCTTTAGAGCAGAACGACTTCATTGTTTTCACACATATTGAAAACAATGTGTTTAAGATTAAAATTCTTGAACTGTCGTCTAGGTGTGAAAAGATGAAGGTAATGGATGAAGAGGAAAAGAATGACGATGATGATGATGATGGTAGTGATGACGAGGATTATAATGTTGTTGATGATGATGTTGATGTTGATGATGATGATGATGATTTTAGTGATGATGACGATGATGATGAAGTTAGTAGAAATAAATATCAACATTGTAGAACCTGCAAAGCATGTGGCATCGGGAGCAGCTCTATGGTTCGAAAACTTGAAACAGATGAAATTGATGCTGAAATCATATACCAAAAAAAGTTATTAAGGATTTCTGCCTCTGCTTCACAAAACATGTCAACCTTATATGTTGCAACTGCAAGGGTATTGAGAGCAATGAAATAG 672 0.3482 MTNTFNEFPNFFKVFLPEKHSDRMLIPVAFVKLMISKQKVLKNYIFRDQRGRDWKVKARPIDGKLYFDDGWKQFKDENSLEQNDFIVFTHIENNVFKIKILELSSRCEKMKVMDEEEKNDDDDDDGSDDEDYNVVDDDVDVDDDDDDFSDDDDDDEVSRNKYQHCRTCKACGIGSSSMVRKLETDEIDAEIIYQKKLLRISASASQNMSTLYVATARVLRAMK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00290 223 CDD B3_DNA 9 101 IPR003340 GO:0003677
Vifa3g00290 223 PANTHER B3 DOMAIN-CONTAINING 7 147 - -
Vifa3g00290 223 SMART B3_2 11 104 IPR003340 GO:0003677
Vifa3g00290 223 MobiDBLite consensus disorder prediction 114 158 - -
Vifa3g00290 223 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Vifa3g00290 223 Gene3D - 3 107 IPR015300 -
Vifa3g00290 223 MobiDBLite consensus disorder prediction 117 154 - -
Vifa3g00290 223 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Vifa3g00290 223 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00290 Vifa-Chr3 33993030 33994094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00290 8 125 B3 DNA Binding Superfamily AT3G06160 30.508 1.82e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g00290 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00290 - - mtr:120578114 198.749