Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00287 ATGCACAACATTAGTCTAAACATGCCACCAATGGTTCAAACATTCGACCCCGAACACATATTCAAAAACCGTTGCATTTGGGTGAATGGACCTGTAATAGTTGGTGCTGGTCCTTCAGGCTTAGCAGTTGCAGCTTGCCTAAAAGACCAAAACTTCATCAACTACCTCGAATCGTATGCGAAACACTTCAACATAAAACCGAATTTCAATGAAACAGTGCAGTCTGCTAAGTATGATGAAATCTTCGGTCTTTGGAGGATTAAGACTATTAGGAAAAAAAGCGATGAATTTGTGGAAGTTGAGTATATTTGTAGGTGGCTTGTTGTTGCTACGGGCGAAAACGCGGAGAAAGTTGTTCCCGAGTTTGAAGGTTTGAATGATTTTGGTGGACATGTTATGCATGCTTGTGATTATAAATCTGGTGAAGGTTATAGTGGAAAGAAAGTTCTTGTTGTCGGGTGCGGAAATTCGGGCATGGAAGTTTCTCTTGATCTTTGTAACCATAATGCAAATCCATCAATGGTTATTAGAAGCTCAGTTCATGTGTTGCCAAGGGAAGTGTTTGGAAAATCAACTTATGAGTTAGCAGCTATATTGATGAAAAAGTTGCCAATTTGGATGGTTGATAAGATATTGCTTCTTCTCACTCGTTTGATTTTGGGGAATGTTGAAAAATATGGTGTTAAACGGCCATGTATGGGACCTTTAGAGCTTAAGAACATTTTCGGGAGGACACCGGTTTTAGATATTGGCGCACTCGAGAAAATTAGATCTGGAAAAATCAATGTTGTTCCCGGAATTAAGAGATTTTCGCAAGGGAAAGTCGAACTCGTGAATGGAAATTTTCTTGATATCGATTCCGTTGTTCTTGCTACCGGGTATAGAAGCAATGTACCTTCATGGCTTAAGGAGAATGAATTTTTTTCGGATGATGGAATACCGAAAGATCCATTTCCGAATGGATGGAAAGGAAAAGCTGGTTTGTATGCAGTTGGATTTACAAGAAAAGGACTTTCTGGTGCATCATTGGATGCCATTAGTGTATCTCATGACATTGCTAAAAGTGTGAGAGAAGAAACAAAACAGAGAAAAAAAACAGTGGCTGCACGTCATAGGAGATGCATTTCACATTTCTAA 1137 0.3931 MHNISLNMPPMVQTFDPEHIFKNRCIWVNGPVIVGAGPSGLAVAACLKDQNFINYLESYAKHFNIKPNFNETVQSAKYDEIFGLWRIKTIRKKSDEFVEVEYICRWLVVATGENAEKVVPEFEGLNDFGGHVMHACDYKSGEGYSGKKVLVVGCGNSGMEVSLDLCNHNANPSMVIRSSVHVLPREVFGKSTYELAAILMKKLPIWMVDKILLLLTRLILGNVEKYGVKRPCMGPLELKNIFGRTPVLDIGALEKIRSGKINVVPGIKRFSQGKVELVNGNFLDIDSVVLATGYRSNVPSWLKENEFFSDDGIPKDPFPNGWKGKAGLYAVGFTRKGLSGASLDAISVSHDIAKSVREETKQRKKTVAARHRRCISHF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00287 378 Pfam Flavin-binding monooxygenase-like 47 299 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vifa3g00287 378 PRINTS FAD-dependent pyridine nucleotide reductase signature 148 166 - -
Vifa3g00287 378 PRINTS FAD-dependent pyridine nucleotide reductase signature 31 50 - -
Vifa3g00287 378 SUPERFAMILY FAD/NAD(P)-binding domain 32 355 IPR036188 -
Vifa3g00287 378 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 50 369 - -
Vifa3g00287 378 Gene3D - 49 367 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00287 Vifa-Chr3 33275403 33276881 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00287 K11816 - gmx:100818345 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00287 3 33275403 33276881 Vifa3g00287 3 33275403 33276881 ECH
Vifa5g02800 5 926760697 926762278 Vifa3g00287 3 33275403 33276881 PCT