Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00280 ATGGTGAAAGAGTACCCTGATTTCTTCAAAGTCTTCCTCATAGAGAAGGATCATGAGAGAATGCTTATCCCAAATGCTTTTGTGAACTTGCTGCTTTCAAAAAAGACTGTAATGCCGGATTTTATCCTAAGAAATCACCGAGGTAGAGATTGGCATGTGAAAACGCTTAGTATCGGTCACCAGCTTTATTTTGATGATGGCTGGAAAAGGTTCAAAGAAGAAAATTCTTTAGAAGATAATGACTACATTGTTTTCACGCATGTTGAACACAATGTATTCAAGTTCAAAATCCTCGAACTATCGTCTATGTGTGAAAAGGAAAAGGTAAATGATGAGGTGGAAAAGAATAATACTACTGTGAATGGTGATAATGAGAACGAACATCAACATTGCAGACCCTGCAATCCTTGGTGCATTGGTAGCAGATCTGCGATAACAAAACTGAAAGACGTGGAAATCGATGCTGAAATGTATATTCAGCAGGGAAACCCATACTTTTTAACAAGATATATTTATTACAGACCCAACGAGTTGTATATTCCGAAAAATGTGATTCAGGATCTATGCCTTTGCTTCACAAAGCATATAACTCTTGTATGTTGTCACTGCAAGGATGTTGGAGGAAATGAAAAAGGTGCATATCATCATATCTTGCCACAAATCAACACGGAACATATTGAAAAGAGAGGCAAAATACGTAGGTGGAGAGATGGGCGAGTGTTTGTGCAAGGGTGGGAAGAGTTTTGTAGAAAGAGCAAGATTACAGAAAAGGATGTATGCTTATGTGAACTTGTGTTGCGCGAAGACGGAACTGTCGAAATGTTGAGGGTGCATGTTGTTAATGTTGGGAAGGAATGA 858 0.3858 MVKEYPDFFKVFLIEKDHERMLIPNAFVNLLLSKKTVMPDFILRNHRGRDWHVKTLSIGHQLYFDDGWKRFKEENSLEDNDYIVFTHVEHNVFKFKILELSSMCEKEKVNDEVEKNNTTVNGDNENEHQHCRPCNPWCIGSRSAITKLKDVEIDAEMYIQQGNPYFLTRYIYYRPNELYIPKNVIQDLCLCFTKHITLVCCHCKDVGGNEKGAYHHILPQINTEHIEKRGKIRRWRDGRVFVQGWEEFCRKSKITEKDVCLCELVLREDGTVEMLRVHVVNVGKE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00280 285 CDD B3_DNA 6 98 IPR003340 GO:0003677
Vifa3g00280 285 Gene3D - 146 282 IPR015300 -
Vifa3g00280 285 SMART B3_2 8 101 IPR003340 GO:0003677
Vifa3g00280 285 SUPERFAMILY DNA-binding pseudobarrel domain 160 277 IPR015300 -
Vifa3g00280 285 PANTHER B3 DOMAIN-CONTAINING 3 269 - -
Vifa3g00280 285 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Vifa3g00280 285 ProSiteProfiles B3 DNA-binding domain profile. 6 101 IPR003340 GO:0003677
Vifa3g00280 285 Gene3D - 2 104 IPR015300 -
Vifa3g00280 285 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00280 Vifa-Chr3 31767812 31768987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00280 6 279 B3 DNA Binding Superfamily AT3G06160 25.402 1.09e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g00280 B3 3.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00280 - - mtr:120578114 385.185