Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00272 ATGTATAAACCAACAGCATCTGAAGTTTTAATTCTGCTGCTTCTGTTATGTGTATCTGCAACTGCTAAGGGATTTTCAAAATGCAACTGTGATGATGAAACAAGCTGGTGGACTATTGACAACATTCTAGAATGCCAGAAAATCGGGGATTTCTTAATCGCCATTGCGTATTTCTCGATCCCTGTCGAGCTTCTCTATTTCATTAGTTGCTCAAATATTCCATTCAAATGGGTTCTTTTTCAGTTCCTTGCATTCATAGTCCTTTGTGGAATGACACATTTGTTTAACAGTTGGACTTATGGACCCCACACTTTTCAAACCGTTGTGACACTAACGGTCTTAAAAGTCCTTACTGCAATGGTTTCATTGGCAACTGCCATAACATTGATTACTTTGATCCCTTTGCTTCTTAAAGTGAAGGTTCGAGAGTTTTTGCTCAAGCGTAAGACAAGGGAGCTTGGAATCGAGGTTGGTATGATCACGAAACAGAATGAAGCTGGAATGCATGTGAGAATGCTTACTCAAGAGATTCGAAAATCGCTCGATAGACATAAGATTTTGTATACTACTTTGGTTGAAATGTCAAAAACTTTAGGGTTGCAGAATTGTGCTGTGTGGATGCCTAATGTTGATAAAACCGAAATGAACCTCACTCATGAACTGAATGGGAGGAATGTTAACTCTTCTATACCGATTACTGATTCGGATGTTGCAAGAGTTAAGGGAGATAATGTAGTTAAAGTTATTGATTCTGATTCGCTGCTTGCGTCTGCAAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCAATTCGAATGCGAATGCTTCGTGTTAGCGATTTCAAAGGAGGAGCGTCTGAAGTAACGGAAGCTTGTTACGCGATACTTGTTTTGGTACTTGCGAGTTCAGAGGACAGGTCTTGGAGCAATCAAGAGTTGGAGATTATTAAAGTTGTTGCTGATCAGGTAACTGTGGCTCTTTCTCATGCTGCGGTTCTTGAAGAGTCACAGCTCATGAGGGAGAAATTGGAGGAGCAAAATCGAGCATTGCAACAAGAGAAAAGAAAGACTTTGATGGCGAGCGAGGCTAGAGCGGTTTTTCAGAAAGTTATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGTTTGCTTTCAATGTTGCAAGATGAGAATTTAAAAAATGAACAGAAGCTTATTGTGGATTCAATGGTAAGGACAAGCAGTGTTTTATCGAACTTGATGAACGATGCTATGGATAATTCAGATAGGGAGAGTGGAAGTGGAAGATTTACTTTGGAGATGAAATGTTTTGGGTTACATAACATGTTGAGAGAAGCAGCTTGCATTGCTAAGTGTATGAGTTTATGCATGAGTTTTGGATTTAAGGTTGAGGTTGATAAAACCTTGCCTAACTATGTTATCGGCGATGAAAAGAGGGTCTTTCAGGTGATTTTGCACATGGTTAGGAACCTTATAGATGGTAACCACGGTGGAGGTATTCTTGTGTTTCGAGTTTTTGCAGAATCGGGAAGCCGAGGAAGGACTGATCAAGGATATGCAACTTGGAGACCAAGCTTGTGTAGCGGTGATGTGCATGTTAGATTTGAGATAGGGATCAATAGTAGTGATTCTGAATCGGAGACCTCAGCTTCTTCAGGCCGGCTTTCAGGTAGGATGCATACGAGTGATCGGGCGTTCGATGAAAAATTGAGCTTCAGCATTTGCAAGAAGATAATCCAGTCTATGAAAGGGAGCATACAGTCAGTACCAAATGCTAGAGGCTCTCCGCATCTCATGACCCTTGCTCTTCGGTTTCGGTTACGTCGTTCAATCGCAGTAACCATCTCTGAAGCAGGGGAGAGTTCAGAGTCGTCGAGTTCGAATTCTTTGTTCCGAGGTCTGCAAGTCTTGTTGGCTGACAGCGACGATGTTAATAGAACAGTAACACTTAAATTTCTTCAAAAACTAGGCTGTGTTGTCACATCAGTTCCTTCCGGATTCGAATGTCTTAGTCTTTTCGGACCTGCTGGTAGATCTCCCTTTGAAGTCATTCTTTTGGATCTTCACTTGCCTGATTTAGATGGATTTGAAGTTACTTCGAGGATCCGAAAGTTTAAAAGCCGCAACTGGCCTATCGTAGTTGCTTTGACAGCAAGCTCGGGAGAAGATTTGCAGGAAAAATGCATGCATGTTGGATTTAATGGAGTTATCCGAAAGCCGATTCTGTTGAAAGGATTCTCCGACGAACTTCGAAGAATCCTGAAGGGAAACTAG 2283 0.4174 MYKPTASEVLILLLLLCVSATAKGFSKCNCDDETSWWTIDNILECQKIGDFLIAIAYFSIPVELLYFISCSNIPFKWVLFQFLAFIVLCGMTHLFNSWTYGPHTFQTVVTLTVLKVLTAMVSLATAITLITLIPLLLKVKVREFLLKRKTRELGIEVGMITKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVEMSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNVNSSIPITDSDVARVKGDNVVKVIDSDSLLASASSGVSVDAGPVAAIRMRMLRVSDFKGGASEVTEACYAILVLVLASSEDRSWSNQELEIIKVVADQVTVALSHAAVLEESQLMREKLEEQNRALQQEKRKTLMASEARAVFQKVMSNGMGRPMHSVMGLLSMLQDENLKNEQKLIVDSMVRTSSVLSNLMNDAMDNSDRESGSGRFTLEMKCFGLHNMLREAACIAKCMSLCMSFGFKVEVDKTLPNYVIGDEKRVFQVILHMVRNLIDGNHGGGILVFRVFAESGSRGRTDQGYATWRPSLCSGDVHVRFEIGINSSDSESETSASSGRLSGRMHTSDRAFDEKLSFSICKKIIQSMKGSIQSVPNARGSPHLMTLALRFRLRRSIAVTISEAGESSESSSSNSLFRGLQVLLADSDDVNRTVTLKFLQKLGCVVTSVPSGFECLSLFGPAGRSPFEVILLDLHLPDLDGFEVTSRIRKFKSRNWPIVVALTASSGEDLQEKCMHVGFNGVIRKPILLKGFSDELRRILKGN 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00272 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vifa3g00272 760 Gene3D - 327 427 - -
Vifa3g00272 760 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vifa3g00272 760 SMART gaf_1 182 338 IPR003018 GO:0005515
Vifa3g00272 760 SUPERFAMILY GAF domain-like 185 331 - -
Vifa3g00272 760 FunFam Ethylene receptor 4 331 425 - -
Vifa3g00272 760 SMART REC_2 637 757 IPR001789 GO:0000160
Vifa3g00272 760 Coils Coil 334 361 - -
Vifa3g00272 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 758 - -
Vifa3g00272 760 ProSiteProfiles Response regulatory domain profile. 638 757 IPR001789 GO:0000160
Vifa3g00272 760 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Vifa3g00272 760 SUPERFAMILY CheY-like 634 757 IPR011006 -
Vifa3g00272 760 Gene3D - 430 610 IPR036890 -
Vifa3g00272 760 Pfam Response regulator receiver domain 639 744 IPR001789 GO:0000160
Vifa3g00272 760 Gene3D - 637 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00272 Vifa-Chr3 29724409 29726804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00272 25 758 Miscellaneous Gene Families AT3G04580 51.604 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g00272 GAF 7.7e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00272 K14509 - gmx:100802948 1026.16