Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00262 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATGAACAACTATCCATTGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTAGAACTTTGTGACCCTGATTTGTTCCAAGACTCTCTCCAACAAAACTCTGACGTTACTTCTACCTCAAATTGTTGTCATCATGAAGAAAACATCAACAACATCAACAACAATAACAACAATAACTCTTCATATACCTTAAACAATATTTCACAAGCTTTAGATTTAGACAATAACATCAATAGCAATAGCAATAGTACTACAAGCACAACAAGCAACAATAACACAACCAATAATAACCTTCCAATTATCTTCGATTCGCAACAAGATATCGACAATGACATATCGGCTTCGATAGACTTCACATCGTCGCAGTCTTTCCTCGTTCCGTCGCTTCTTCCACTCAATACTCATCAGGAACAACAATTTGATTTCTCTTCAACACAACCTCATCATAATCCTCTTCAGCTATCAACATGTTCAGTTTTGAAAGGACTGTCTTCGCAGTATCATCAAACTGATCACATTCCTGTTTCGGCGCCTCTCATCGGTGCTTCGTTCGGTTCTGTGTTTGAAGATGATTGCATATCTTCTATTCCTTCTTATTCTCCTTCTTGTTCTTATCTTAATAACGGGTTAGGTGTGTATATGCCTCATGGAAATCTTGCTAGTGGTTTGTCTGGTGACACTTCTGGCTTGTTTGGTGGAGGAATTCTATTAGGTTCTGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTCTACAGATTCTGTTCAGCAGCTGTTTAATCCTCAGGATTTTCAGGCACTTGGTACTGAGAATCACAAACTAGTAGCTGGAAATTCCGCCACTTTATCACCAGAAATCTCACATTTGGAGGACTCTACCTTAAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAAAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGGAAAACATTAGCCGATAGCCGGCCTCGAGTTAGAGGAAGGTTTGCAAAGAATGATGAATTTGGAGAGAATCAAAGGCCAGCTTGTAGCAACCATGAAACTGATGATGAAATAGCTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAACTCCTTCAAATGCAACTATTCTATTCAGTCCTTGATTTGA 1257 0.3755 MLQDVIHPPSHDEQLSIDEISSPNISAQILELCDPDLFQDSLQQNSDVTSTSNCCHHEENINNINNNNNNNSSYTLNNISQALDLDNNINSNSNSTTSTTSNNNTTNNNLPIIFDSQQDIDNDISASIDFTSSQSFLVPSLLPLNTHQEQQFDFSSTQPHHNPLQLSTCSVLKGLSSQYHQTDHIPVSAPLIGASFGSVFEDDCISSIPSYSPSCSYLNNGLGVYMPHGNLASGLSGDTSGLFGGGILLGSEMQTQDLDYQGENGGIYSTDSVQQLFNPQDFQALGTENHKLVAGNSATLSPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGENQRPACSNHETDDEIAVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00262 418 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Vifa3g00262 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 122 384 IPR045281 GO:0009909
Vifa3g00262 418 MobiDBLite consensus disorder prediction 90 110 - -
Vifa3g00262 418 Pfam CCT motif 322 364 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00262 Vifa-Chr3 29042609 29046822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00262 302 370 C2C2-CO-like Transcription Factor Family AT5G24930 39.130 3.85e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g00262 CCT 5.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00262 - - gmx:100807304 481.485