Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00258 ATGGCAGCCGCTAGACCCCTCGTCACCGTCCAGGCACTGGACTCCGACATGGCCACCGATTCCCCAACATCCCTACCCATCCCCGACGTAATGCGCGCCTCAATTCGCCCTGACATCGTCAATTTCGTCCACTCAAACATCTCCCACAATAGCCGCCAACCCTACGCCGTCAGCCGCAAAGCCGGTCACCAAACCTCCGCCGAATCATGGGGAACTGGTCGTGCCGTCTCCCGTATCCCTCGTGTCGCCGGTGGAGGAACCCACCGTGCAGGTCAAGCTGCCTTCGGAAACATGTGTCGCGGTGGTCGTATGTTTGCTCCGACCAGGATCTGGCGCAGATGGCACCGCAAGATCAATGTCAACCAGAAGCGTTACGCAGTGGTCTCAGCCATAGCTGCATCCGCTGTTCCTTCCCTTGTTCTCGCTCGTGGTCACAGGATCGAAGCCGTTCCTGAATTCCCTCTCGTTGTTGGTGATTCCGCTGAAGGAGTGGAGAAAACAAAGGAAGCAATCAAGGTTTTGAAAAAGATCGGAGCTTTTCCCGACGCCGAGAAAGCTAAGGATAGTCACGGAATTCGTCCCGGAAAAGGTAAAATGCGTAACCGTCGATATATCTCTCGAAAAGGACCTTTGATTGTTTACAGTAACGAAGGAGCCAAAGCTGTTAAAGCTTTTAAGAACATTCCTGGTGTTGAAATTGCCAATGTTGAGAGACTTAATCTTTTGAAACTTGCACCTGGTGGACATTTAGGTAGATTTGTTGTTTGGACTAAGTCTGCATTTGAGAAACTTGATTCGATTTATGGGTCTTTTGATAAGGCTTCTGAGAAGAAAAAGGGGTATGTTTTACCTAGGGCAAAGATGACTAATTCTGATTTGACTAGGATTATTAACTCTGATGAAGTTCAATCTGTTGTGAGACCTATTAAGAAGGATCTTAAGAGGGCCACTCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCTAAGACTGCTAAGAGGATGTCTTTACTTGCCGAGGCTGAGCGTCTTAAATCTAAGAAGGAGAAGCTTGATAAGAAAAGAAAGACCGTGTCTAAGGAGGAAGCTTCTGCCATTAAGGCAGCAGGAAAAGCATGGTACAACACCATGGTCTCAGATTCTGATTATACAGAATTCGACAACTTCTCCAAGTGGTTGGGTGTTTCACAGTGA 1215 0.4733 MAAARPLVTVQALDSDMATDSPTSLPIPDVMRASIRPDIVNFVHSNISHNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYSNEGAKAVKAFKNIPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKASEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPIKKDLKRATLKKNPLKNLNVMLRLNPYAKTAKRMSLLAEAERLKSKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00258 404 Pfam 60S ribosomal protein L4 C-terminal domain 279 351 IPR025755 -
Vifa3g00258 404 ProSitePatterns Ribosomal protein L1e signature. 119 145 IPR013000 -
Vifa3g00258 404 Coils Coil 341 371 - -
Vifa3g00258 404 Pfam Ribosomal protein L4/L1 family 27 265 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vifa3g00258 404 PANTHER 60S RIBOSOMAL PROTEIN L4 3 397 IPR045240 -
Vifa3g00258 404 FunFam 60S ribosomal protein L4 2 307 - -
Vifa3g00258 404 SUPERFAMILY Ribosomal protein L4 22 266 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vifa3g00258 404 Gene3D - 2 307 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00258 Vifa-Chr3 27980276 27982379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00258 2 404 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.638 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00258 K02930 - gmx:100779764 717.998