Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00257 ATGTCGCTGCCGGAATGTTCGGCGACGCAACTAGCGCAGCTCATCGGTCCCAACGCTACAAACGCGGCAGCCGCCGCAGATTTCATCTGCAGCCAGTTCACAGCCGTGGGAAATAAGTTCGTCGACACTCAATATGCGGTGGATAACACGTACCTTCTATTCTCAGCTTATCTTGTTTTCTCTATGCAACTTGGTTTCGCTATGCTCTGTGCCGGTTCAGTTCGAGCCAAAAACACCATGAACATCATGCTCACAAACGTTCTAGACGCCGCCGCCGGTGGGCTGTTTTACTATCTCTTCGGTTTCGCCTTCGCTTTCGGTGGACCTTCAAACGGGTTCATCGGAAAACATTTCTTCGGCCTCAAAGATGTTCCGTCTGAAGCTTTCGATTACAGCTACTTCCTCTATCAGTGGGCTTTCGCCATAGCAGCCGCTGGTATCACCAGCGGCTCTATAGCAGAACGAACACAGTTCGTTGCTTATCTTATCTATTCCTCTTTCCTCACCGGATTTGTTTACCCTGTTGTTTCTCATTGGTTTTGGTCCAGTGATGGTTGGGCTAGCGCCACCAACACTGGAAACCTCTTGTTTAGCACCGGAGTTATCGATTTCGCTGGCTCCGGTGTCGTTCATATGGTTGGTGGGATTGCTGGTCTATGGGGAGCGCTTATTGAAGGTCCACGAATTGGACGATTCGATCATAACGGTCGCGCTGTCACTCTTCGCGGACACAGTGCTTCTCTGGTTGTTCTTGGAACTTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACCAAGATTCTAAGCTCTTATGAATCAGGTACTTATTATGGTCAATGGAGTGCGGTGGGAAGAACCGCGGTAACGACGACACTGGCTGGATGTACAGCGGCGTTGACTACACTTTTCGGGAAAAGAATTCTCTCCGGTCACTGGAACGTTACCGATGTCTGTAACGGATTACTAGGCGGATTCGCCGCCATAACCGCCGGTTGTTCCGTCGTGGAGCCATGGGCAGCCATCGTGTGTGGATTTATAGCAGCGGTGGTTCTGATCTCGTGTAACGTACTCGCGGAGAAAGTGCGTTACGATGATCCATTAGAAGCAGCGCAGCTTCACGGAGGATGTGGCGCGTGGGGGATAATATTCACCGCTTTGTTTGCTAAGAAAGAGTATGTGAACCAGGTTTACCCGGGTAAACCGGGTCGACCGTATGGGTTATTTATGGGTGGTGGAGGGAAGTTATTAGGGGCACATGTGATTCAAATTTTGGTTATTATTGGGTGGGTTAGTGCAACTATGGGTCCTCTTTTCTTTGCTTTGAATAAAATGAAATTGTTAAGGATCTCAGCAGAAGATGAACTTGCGGGTATGGATTTGACCCGACATGGTGGGTTTGCTTATGCTTATGAAGATGAGCCACATGAACATGGGATTCACTTGAGGAAAGTTGATCATAATTCTTCTTCTACTCCAACTCCAACTACCACCACAGATTTGTGA 1515 0.4865 MSLPECSATQLAQLIGPNATNAAAAADFICSQFTAVGNKFVDTQYAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGGPSNGFIGKHFFGLKDVPSEAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSSDGWASATNTGNLLFSTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHNGRAVTLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSSYESGTYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAVVLISCNVLAEKVRYDDPLEAAQLHGGCGAWGIIFTALFAKKEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFALNKMKLLRISAEDELAGMDLTRHGGFAYAYEDEPHEHGIHLRKVDHNSSSTPTPTTTTDL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00257 504 FunFam Ammonium transporter 29 486 - -
Vifa3g00257 504 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa3g00257 504 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa3g00257 504 PANTHER AMMONIUM TRANSPORTER 20 476 - -
Vifa3g00257 504 SUPERFAMILY Ammonium transporter 45 453 - -
Vifa3g00257 504 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vifa3g00257 504 Gene3D Ammonium transporter AmtB like domains 29 491 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00257 Vifa-Chr3 27622185 27623857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00257 5 498 Inorganic Solute Cotransporters AT4G13510 81.275 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00257 K03320 - egt:105950262 824.698