Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00252 ATGGTTGGCAAGGGAAAAGTCCATAACACTCTGGGAGAAGTACTTCATCATAAACCGCTCCCTTCTGGATATTTGAAAGTGTCGATTGATATTGCTTTAGAGGAGGGTGCGTTATTACCAATCCCAGATGAAGTTCCGGATGCAAAATTGGTGGGAGAGGCAATAGGAGCGTTTGTTGCATGGCCGTCAAGGCTTGTTCGCATAGATGATGAGACTCCTACAAAACCCAAACCAAAAGATAAAGGGATTACGCGGCCAGAGGAGTCAGTGACAGCAAAAAAAAAACAGATTATTCCTGCTAAAGAGATTGAAGTTGTAAGTAGGGCAATTCTGGCTAATCCGTGGTGGGCAGATCAACAGGTGGGATTGTCTGGGGTGGTGGATCATCACCACCACGCATCAGACAATTCACCTGGCTCAAACAAACGCCACCACGCGGAACTTTTCATGAATGAAACGAAAAGAAGAGAAGAAGAGGAGGATGAAGAAAGAGAGGAGGAGGAACCGAAAGAAGGCGCGGTGGAAATTGGAAACAGAAGACCAAGAGGGAGACCACCGGGTTCTAAAAACAAACCAAAACCGCCCATCTTTATAACAAGAGACAGTCCAAATTCACTGAAAAGCCATGTGATGGAAGTATCCCCTGGGGTGGATGTAGCCGAGAGCGTAGCTCAGTTCGCGAGAAGGAGACAGCGCGGAGTTTGTATCTTAAGCGGTAGCGGATCAGTAGCAAATGTTACCCTCAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTTCATGGAAGGTTCGAGATTCTATCGTTAACCGGAGCTTTTCTACCCGGCCCGTCTCCTCCCGGTGCTACCGGACTCACAGTTTACTTAGCTGGTGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGACCTTTGATCGCTGCTGGATCTGTTATAGTTATCGCCGCTACTTTTGCTAATGCTACTTATGAAAGATTACCACTTGAGGAGGAAGAAGAGGATGATGGTGGGATCCATGGAGGACATCATGCTGGTGCTAATAATTCATCTCCTCCCGGAATTGGAAGTAGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGCCATATGCAGTCTGCCCTTCCAGATCCATCTTCTATGCCTTTGTACAACCTGCCACCAAATCTTCTTCCTAATGGTGGCCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCATACTGA 1236 0.4846 MVGKGKVHNTLGEVLHHKPLPSGYLKVSIDIALEEGALLPIPDEVPDAKLVGEAIGAFVAWPSRLVRIDDETPTKPKPKDKGITRPEESVTAKKKQIIPAKEIEVVSRAILANPWWADQQVGLSGVVDHHHHASDNSPGSNKRHHAELFMNETKRREEEEDEEREEEEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFITRDSPNSLKSHVMEVSPGVDVAESVAQFARRRQRGVCILSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPSPPGATGLTVYLAGGQGQVVGGSVVGPLIAAGSVIVIAATFANATYERLPLEEEEEDDGGIHGGHHAGANNSSPPGIGSSGGGGGGGGGGGHMQSALPDPSSMPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00252 411 Gene3D - 207 339 - -
Vifa3g00252 411 MobiDBLite consensus disorder prediction 69 95 - -
Vifa3g00252 411 MobiDBLite consensus disorder prediction 329 386 - -
Vifa3g00252 411 FunFam AT-hook motif nuclear-localized protein 206 333 - -
Vifa3g00252 411 SUPERFAMILY AF0104/ALDC/Ptd012-like 203 332 - -
Vifa3g00252 411 MobiDBLite consensus disorder prediction 153 204 - -
Vifa3g00252 411 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 145 405 IPR014476 GO:0003680
Vifa3g00252 411 ProSiteProfiles PPC domain profile profile. 203 341 IPR005175 -
Vifa3g00252 411 Pfam Plants and Prokaryotes Conserved (PCC) domain 208 319 IPR005175 -
Vifa3g00252 411 CDD DUF296 207 290 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00252 Vifa-Chr3 26074259 26082191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00252 111 411 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.645 3.43e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00252 - - mesc:110601522 333.569