Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00251 ATGAATGAAACGAAAAGAAGAGAAGAAGAGGAGGATGAAGAAAGAGAGGAGGAGGAACCGAAAGAAGGCGCGGTGGAAATTGGAAACAGAAGACCAAGAGGGAGACCACCGGGTTCTAAAAACAAACCAAAACCGCCCATCTTTATAACAAGAGACAGTCCAAATTCACTGAAAAGCCATGTGATGGAAGTATCCCCTGGGGTGGATGTAGCCGAGAGCGTAGCTCAGTTCGCAAGAAGGAGACAGCGCGGAGTTTGTATCTTAAGCGGTAGCGGATCAGTAGCAAATGTTACCCTCAGACAACCAGCAGCACCGGGAGCTGTTGTAGCACTTCATGGAAGGTTCGAGATTCTATCGTTAACCGGAGCTTTTCTACCCGGCCCGTCTCCTCCCGGTGCTACCGGACTCACGGTTTACTTAGCCGGTGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGACCTTTGATCGCTGCTGGATCTGTTATAGTTATCGCCGCTACTTTTGCTAATGCTACTTATGAAAGATTACCACTTGAGGAGGAAGAAGAGGATGATGGTGGGATCCATGGAGGACATCATGCTGGTGCTAATAATTCATCTCCTCCCGGAATTGGAAGTAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGAGGTCATATGCAGTCTGCCCTTCCAGATCCATCTTCTATGCCTTTGTACAACTTGCCACCAAATCTTCTTCCTAATGGTGGCCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCATACTGA 789 0.4981 MNETKRREEEEDEEREEEEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFITRDSPNSLKSHVMEVSPGVDVAESVAQFARRRQRGVCILSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPSPPGATGLTVYLAGGQGQVVGGSVVGPLIAAGSVIVIAATFANATYERLPLEEEEEDDGGIHGGHHAGANNSSPPGIGSSGGGGGGGGGGGHMQSALPDPSSMPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00251 262 MobiDBLite consensus disorder prediction 180 237 - -
Vifa3g00251 262 PIRSF ESCAROLA 1 254 IPR014476 GO:0003680
Vifa3g00251 262 ProSiteProfiles PPC domain profile profile. 54 192 IPR005175 -
Vifa3g00251 262 FunFam AT-hook motif nuclear-localized protein 57 184 - -
Vifa3g00251 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 256 IPR014476 GO:0003680
Vifa3g00251 262 MobiDBLite consensus disorder prediction 1 55 - -
Vifa3g00251 262 Gene3D - 58 186 - -
Vifa3g00251 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 170 IPR005175 -
Vifa3g00251 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 183 - -
Vifa3g00251 262 CDD DUF296 58 141 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00251 Vifa-Chr3 25946538 25947326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00251 20 262 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 68.548 8.00e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00251 - - gmx:102663643 317.39