Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00246 ATGACGGAACGTTCTCAAAAAGAAAAGAAGGTTTTCCGCACAATGGAAAACGACAGTGTCGTTTTTCGAAACGGAAATCCAGTTCTCGTCGCTCAGCCACTCACCGTTGTTCGTGCGCTAACCAGCAACGGCGGCGCTCGCGTTCTTGCAACGCCTCCTAATCCGAACCCTAACTCCGACGAGTTCAAACCTTTCAAATCCCCGTTGATTAAAGAAGATGTCAAACTACATATTCGAATTGAGGAAGAAGCTGTGAATGTCAATGTGGCTTGTGAGACACATGAATCGGCTACCGTTGATCCAATTGATGAAACAACGCGGATTCAACCAAATGAAGAAGCTTCCAAGGAGAAGGTAATAGATAGTGATGAATTGGAGATGCTGAAGGTAGTGAAAGGGAACCGAGCTGTTAATGATGGAGTGAGGGTTTTGAATGTGGTGAAGAAAGCGGCTGTGGAAGAGAAGATTCCGAATCTTGAGGATGGTGAGTTTCTTGTTGAACCTGGGTGGTCATTGCTTGGAAGGAAGATTGAGGTTGCTACTTCCACAGCTAAAGGATTGAGGAGATTAGTGGATAATGAGATTGTTTATTTCAATTTCCCTGCCCCAAATACCTCTTACAAGTTCCAATGGATTGTTCGTGTCTCAACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCAAAATCTGTCACGCCTCTTGTGCAAACTGGAAATGTTAGGGTTCGAGGCCGATGCATTGCCACGCCACATAAATTGGAAATGATGCAAGAAATAATGCTGTTAGTGAGTTTTTATGTTCATCAATCTGTATTCTCGGAGTCTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGCCACATTAACTCTGCTGCTTACCCGCTCCTTACACTGTTAAAAATGCTAGAGATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCAAGGAAACGGGTTCTTAGACTTGATTCAGATGATGCTTCTGTTTTGCCTGTTAATAAGCGAAGGAAAGGTGTCTCTGAGCCACTTCCAGAGCCAAATGAGAATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTATTGGAGCTGCTGAAGTATTTGACCTAGAGGAGAAGGAAGCACCAAAAACTCTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAGAAATTGAGAAGGGAGCTGAAGATGAAAATGCTGATAGAAATCTACATCCTTGCTGGTCAGCCTACAATATTTGCAATGGAAGGACAATTTATGTGAACATATTTACTGGGGAGGCGGCAAAGAAATTTCCACAAGCAACACAGAGAGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGGAAGACTGTCATGACAATTGCTTTGATTCTAAGTAATCCAGGCAGGGTGAAATCAGAAGACACTGATGCAGAGAACCCATATGACAACATTTTCTCAACTAAGAGGAGGAATATTAACCCATTGCATAATGTAGAGGGTGGCACTCTGATTGTTTGTCCAATGGCATTATTGGGTCAATGGAAGGACGAGCTTGAAACACATTCGAAATCAGGCAGCATATCCATATTTGTTCATTATGGCGGGGGTAGAACTGATAATGTCAATTTGTTGTTAGAGTATGACGTTGTCTTGACAACTTATGGTGTCCTATCAGCTTCATATAAAAATGATGGAGAGAATAGCATCTACCACAGGGTCCAATGGTTCAGAGTGGTGCTAGACGAAGCTCATCATATTAAAGCCCATAAAAGTCAAGTTGCCCAGGCTACTATTGCCCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATAGTTTGGAAGATTTATTCAGTCTCTTGTCTTTCTTGCGCGTTGAACCATGGTGCAGCTGGCAATGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGATCTAAAGTCCAATTTGAGCAATATGTTGCACAAGGAAAGATTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTAAGACGGTGCTGCAACCATCCACTTTTGGTCATGAGTGGAAGTGATCCTGCAAAGTATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTCGATTCTCATTCTGAATCATCTGATATGCGTTGCGAAAGTGATACACAACAAAATGCAAAATTGAACAAACTTGCTAGTAGATTCCTACAGAATTCTATGTCTTCTTCCAATTCTATTCAATCTCATGGATACATTGATGAGGTTTTGGGTCATCTTCAAAAGGGTGAAATTGAAGAATGCTCTATATGTTTGGAATCACCAGAAGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGCCTCTTCAATTGCTGGGGTACCTCAATGGGCGGCAAGTGTCCAATCTGTCGTCAATTACTCAAGAAAAGTGATCTTATTGTACTTCCATCAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAAGTTTCAAAGCTGTTTGAATTCTTAGAACATATTCAGAAATATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTGTTGGAAAATCCATTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGGGAAAAAGTTCTGAAAGAATTTAACAACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTCAAAGCTGGTGGTGTAGGCTTAAACTTGACTGCTGCCTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTCGAGGAGCAAGCAATAATGAGGATTCATCGCATTGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGAACACAGTGGAAGATCGTCTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCACTCACTGATGATGATGTTCGGACTTCCAGGATTCATGACCTCAAAATGCTATTCTCATAG 3222 0.4199 MTERSQKEKKVFRTMENDSVVFRNGNPVLVAQPLTVVRALTSNGGARVLATPPNPNPNSDEFKPFKSPLIKEDVKLHIRIEEEAVNVNVACETHESATVDPIDETTRIQPNEEASKEKVIDSDELEMLKVVKGNRAVNDGVRVLNVVKKAAVEEKIPNLEDGEFLVEPGWSLLGRKIEVATSTAKGLRRLVDNEIVYFNFPAPNTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVTPLVQTGNVRVRGRCIATPHKLEMMQEIMLLVSFYVHQSVFSESVDTSWRLEACGHINSAAYPLLTLLKMLEIEPYRKADFTPEEMKARKRVLRLDSDDASVLPVNKRRKGVSEPLPEPNENEQALSESALNKLIGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTEIEKGAEDENADRNLHPCWSAYNICNGRTIYVNIFTGEAAKKFPQATQRARGGILADAMGLGKTVMTIALILSNPGRVKSEDTDAENPYDNIFSTKRRNINPLHNVEGGTLIVCPMALLGQWKDELETHSKSGSISIFVHYGGGRTDNVNLLLEYDVVLTTYGVLSASYKNDGENSIYHRVQWFRVVLDEAHHIKAHKSQVAQATIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVEPWCSWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKILNHYANILDLLMQLRRCCNHPLLVMSGSDPAKYADLSRLARKFLDSHSESSDMRCESDTQQNAKLNKLASRFLQNSMSSSNSIQSHGYIDEVLGHLQKGEIEECSICLESPEDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQLLKKSDLIVLPSESPFKVDIENNLTESSKVSKLFEFLEHIQKYSDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNNTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKNTVEDRLQQVQAKKQKMISGALTDDDVRTSRIHDLKMLFS 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00246 1073 CDD DEXDc_SHPRH-like 390 678 - -
Vifa3g00246 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 828 883 IPR013083 -
Vifa3g00246 1073 Gene3D - 440 679 IPR038718 -
Vifa3g00246 1073 SMART ring_2 837 876 IPR001841 -
Vifa3g00246 1073 Pfam SNF2-related domain 393 756 IPR000330 GO:0005524|GO:0140658
Vifa3g00246 1073 Gene3D - 694 825 IPR027417 -
Vifa3g00246 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1064 IPR027417 -
Vifa3g00246 1073 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 204 1072 - -
Vifa3g00246 1073 Pfam HIRAN domain 181 264 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa3g00246 1073 Pfam Zinc finger, C3HC4 type (RING finger) 835 881 - -
Vifa3g00246 1073 ProSitePatterns Zinc finger RING-type signature. 852 861 IPR017907 -
Vifa3g00246 1073 MobiDBLite consensus disorder prediction 338 358 - -
Vifa3g00246 1073 SMART HIRAN_2 173 270 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa3g00246 1073 CDD SF2_C_SNF 893 1031 - -
Vifa3g00246 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 910 1069 IPR001650 -
Vifa3g00246 1073 SMART ultradead3 386 659 IPR014001 -
Vifa3g00246 1073 SUPERFAMILY RING/U-box 834 887 - -
Vifa3g00246 1073 Pfam Helicase conserved C-terminal domain 907 1020 IPR001650 -
Vifa3g00246 1073 FunFam DNA repair protein RAD5B 443 679 - -
Vifa3g00246 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 678 IPR027417 -
Vifa3g00246 1073 ProSiteProfiles Zinc finger RING-type profile. 837 877 IPR001841 -
Vifa3g00246 1073 SMART helicmild6 937 1020 IPR001650 -
Vifa3g00246 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 446 640 IPR014001 -
Vifa3g00246 1073 Gene3D - 884 1071 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00246 Vifa-Chr3 24010089 24015762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00246 107 1072 RAD5 or RAD16-like Gene Family AT5G43530 58.872 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g00246 SNF2_N 1.6e-81 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00246 K15505 - gmx:100806677 1460.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00246 3 24010089 24015762 Vifa3g00246 3 24010089 24015762 ECH